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    Scpep1 serine carboxypeptidase 1 [ Mus musculus (house mouse) ]

    Gene ID: 74617, updated on 23-Jun-2021

    Summary

    Official Symbol
    Scpep1provided by MGI
    Official Full Name
    serine carboxypeptidase 1provided by MGI
    Primary source
    MGI:MGI:1921867
    See related
    Ensembl:ENSMUSG00000000278
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    R; Risc; AI957256; 2410018F01Rik; 4833411K15Rik
    Expression
    Broad expression in placenta adult (RPKM 73.9), bladder adult (RPKM 35.1) and 25 other tissues See more
    Orthologs
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    Genomic context

    See Scpep1 in Genome Data Viewer
    Location:
    11; 11 C
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88814846..88846268, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (88924020..88955442, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (88785334..88816756, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene A kinase (PRKA) anchor protein 1 Neighboring gene RIKEN cDNA 4930556N13 gene Neighboring gene serine carboxypeptidase 1, opposite strand Neighboring gene predicted gene, 23507 Neighboring gene transcription elongation factor B (SIII), polypeptide 2 pseudogene Neighboring gene elongin B-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables serine-type carboxypeptidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables serine-type carboxypeptidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within blood vessel diameter maintenance IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in negative regulation of blood pressure IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    retinoid-inducible serine carboxypeptidase
    Names
    retinoid-inducible serine caroboxypeptidase
    retinoid-inducible serine caroboxypetidase
    serine caroboxypeptidase 1
    NP_083299.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029023.3NP_083299.3  retinoid-inducible serine carboxypeptidase precursor

      See identical proteins and their annotated locations for NP_083299.3

      Status: VALIDATED

      Source sequence(s)
      AK014680, BX518946
      Consensus CDS
      CCDS25230.1
      UniProtKB/Swiss-Prot
      Q920A5
      Related
      ENSMUSP00000000287.9, ENSMUST00000000287.9
      Conserved Domains (1) summary
      pfam00450
      Location:34451
      Peptidase_S10; Serine carboxypeptidase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      88814846..88846268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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