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    Cds1 CDP-diacylglycerol synthase 1 [ Mus musculus (house mouse) ]

    Gene ID: 74596, updated on 19-Feb-2019

    Summary

    Official Symbol
    Cds1provided by MGI
    Official Full Name
    CDP-diacylglycerol synthase 1provided by MGI
    Primary source
    MGI:MGI:1921846
    See related
    Ensembl:ENSMUSG00000029330
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI314024; AW125888; 4833409J18Rik
    Expression
    Broad expression in large intestine adult (RPKM 48.2), duodenum adult (RPKM 46.8) and 17 other tissues See more
    Orthologs

    Genomic context

    See Cds1 in Genome Data Viewer
    Location:
    5; 5 E4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (101765130..101823858)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (102194149..102252871)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9430085M18 gene Neighboring gene predicted gene, 42133 Neighboring gene predicted gene, 42134 Neighboring gene predicted gene 20548 Neighboring gene WD repeat and FYVE domain containing 3 Neighboring gene predicted gene, 42135

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidate cytidylyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring phosphorus-containing groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    CDP-diacylglycerol biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    phospholipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    phosphatidate cytidylyltransferase 1
    Names
    CDP-DAG synthase 1
    CDP-DG synthase 1
    CDP-diglyceride pyrophosphorylase 1
    CDP-diglyceride synthase 1
    CDS 1
    CTP:phosphatidate cytidylyltransferase 1
    NP_775546.2
    XP_006535326.1
    XP_006535327.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173370.3NP_775546.2  phosphatidate cytidylyltransferase 1

      See identical proteins and their annotated locations for NP_775546.2

      Status: PROVISIONAL

      Source sequence(s)
      BC055292
      Consensus CDS
      CCDS19472.1
      UniProtKB/Swiss-Prot
      P98191
      Related
      ENSMUSP00000031273.8, ENSMUST00000031273.8
      Conserved Domains (1) summary
      cl21502
      Location:123457
      CTP_transf_1; Cytidylyltransferase family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      101765130..101823858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535263.2XP_006535326.1  phosphatidate cytidylyltransferase 1 isoform X1

      Conserved Domains (1) summary
      cl21502
      Location:123400
      CTP_transf_1; Cytidylyltransferase family
    2. XM_006535264.1XP_006535327.1  phosphatidate cytidylyltransferase 1 isoform X2

      Conserved Domains (1) summary
      cl21502
      Location:123377
      CTP_transf_1; Cytidylyltransferase family
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