Format

Send to:

Choose Destination
    • Showing Current items.

    Snx11 sorting nexin 11 [ Mus musculus (house mouse) ]

    Gene ID: 74479, updated on 9-Sep-2018

    Summary

    Official Symbol
    Snx11provided by MGI
    Official Full Name
    sorting nexin 11provided by MGI
    Primary source
    MGI:MGI:1921729
    See related
    Ensembl:ENSMUSG00000020876 Vega:OTTMUSG00000001970
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI117694; 4933439F10Rik; A930041K09Rik
    Expression
    Ubiquitous expression in CNS E14 (RPKM 11.2), whole brain E14.5 (RPKM 11.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Snx11 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (96767546..96777699, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (96628863..96638869, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene src family associated phosphoprotein 1 Neighboring gene predicted gene, 38960 Neighboring gene predicted gene, 38448 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene Neighboring gene chromobox 1 Neighboring gene nuclear factor, erythroid derived 2,-like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol phosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    vesicle organization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    endosome ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163389.1NP_001156861.1  sorting nexin-11

      See identical proteins and their annotated locations for NP_001156861.1

      Status: VALIDATED

      Source sequence(s)
      AK042409, AL607127, AV350384
      Consensus CDS
      CCDS25302.1
      UniProtKB/Swiss-Prot
      Q91WL6
      Related
      ENSMUSP00000103288.3, OTTMUSP00000001916, ENSMUST00000107661.9, OTTMUST00000003961
      Conserved Domains (1) summary
      cd06898
      Location:18129
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10
    2. NM_028965.4NP_083241.1  sorting nexin-11

      See identical proteins and their annotated locations for NP_083241.1

      Status: VALIDATED

      Source sequence(s)
      AK076332, AL607127, AV350384
      Consensus CDS
      CCDS25302.1
      UniProtKB/Swiss-Prot
      Q91WL6
      Related
      ENSMUSP00000021246.2, OTTMUSP00000001917, ENSMUST00000021246.8, OTTMUST00000003962
      Conserved Domains (1) summary
      cd06898
      Location:18129
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      96767546..96777699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011249289.2XP_011247591.1  sorting nexin-11 isoform X1

      See identical proteins and their annotated locations for XP_011247591.1

      UniProtKB/Swiss-Prot
      Q91WL6
      Conserved Domains (1) summary
      cd06898
      Location:18129
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10
    2. XM_006534375.3XP_006534438.1  sorting nexin-11 isoform X1

      See identical proteins and their annotated locations for XP_006534438.1

      UniProtKB/Swiss-Prot
      Q91WL6
      Conserved Domains (1) summary
      cd06898
      Location:18129
      PX_SNX10; The phosphoinositide binding Phox Homology domain of Sorting Nexin 10
    Support Center