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    Eaf1 ELL associated factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 74427, updated on 31-Jan-2019

    Summary

    Official Symbol
    Eaf1provided by MGI
    Official Full Name
    ELL associated factor 1provided by MGI
    Primary source
    MGI:MGI:1921677
    See related
    Ensembl:ENSMUSG00000021890
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI666536; 4933403C17Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 21.1), liver E14 (RPKM 15.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Eaf1 in Genome Data Viewer
    Location:
    14; 14 B
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (31495079..31509858)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (32308265..32323044)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene SH3-domain binding protein 5 (BTK-associated) Neighboring gene predicted gene, 35907 Neighboring gene methyltransferase like 6 Neighboring gene collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase Neighboring gene uncharacterized LOC102639719

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    ELL-EAF complex IEA
    Inferred from Electronic Annotation
    more info
     
    intercellular bridge ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription elongation factor complex ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028932.4NP_083208.1  ELL-associated factor 1

      See identical proteins and their annotated locations for NP_083208.1

      Status: VALIDATED

      Source sequence(s)
      AK036661, AK044181, AK044737
      Consensus CDS
      CCDS26914.1
      UniProtKB/Swiss-Prot
      Q9D4C5
      Related
      ENSMUSP00000022446.5, ENSMUST00000022446.6
      Conserved Domains (1) summary
      pfam09816
      Location:16114
      EAF; RNA polymerase II transcription elongation factor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      31495079..31509858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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