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    Ankrd9 ankyrin repeat domain 9 [ Mus musculus (house mouse) ]

    Gene ID: 74251, updated on 8-Jul-2021

    Summary

    Official Symbol
    Ankrd9provided by MGI
    Official Full Name
    ankyrin repeat domain 9provided by MGI
    Primary source
    MGI:MGI:1921501
    See related
    Ensembl:ENSMUSG00000037904
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2500003O20Rik
    Expression
    Broad expression in duodenum adult (RPKM 50.8), small intestine adult (RPKM 40.0) and 23 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ankrd9 in Genome Data Viewer
    Location:
    12; 12 F1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (110942854..110945516, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (110976420..110979082, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (112213563..112217231, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 2 interacting protein Neighboring gene tectonin beta-propeller repeat containing 2 Neighboring gene ribosomal protein S19, pseudogene 6 Neighboring gene predicted gene, 51959 Neighboring gene RIKEN cDNA 6030440G07 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables ubiquitin ligase-substrate adaptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cellular copper ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein ubiquitination ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of Cul5-RING ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 9

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361916.1NP_001348845.1  ankyrin repeat domain-containing protein 9

      Status: VALIDATED

      Source sequence(s)
      AC153152
      Consensus CDS
      CCDS26174.1
      Related
      ENSMUSP00000119339.2, ENSMUST00000135131.2
      Conserved Domains (2) summary
      sd00045
      Location:157188
      ANK; ANK repeat [structural motif]
      pfam13857
      Location:156197
      Ank_5; Ankyrin repeats (many copies)
    2. NM_001361917.1NP_001348846.1  ankyrin repeat domain-containing protein 9

      Status: VALIDATED

      Source sequence(s)
      AC153152
      Consensus CDS
      CCDS26174.1
      Related
      ENSMUSP00000121279.2, ENSMUST00000140788.8
      Conserved Domains (2) summary
      sd00045
      Location:157188
      ANK; ANK repeat [structural motif]
      pfam13857
      Location:156197
      Ank_5; Ankyrin repeats (many copies)
    3. NM_175207.5NP_780416.2  ankyrin repeat domain-containing protein 9

      See identical proteins and their annotated locations for NP_780416.2

      Status: VALIDATED

      Source sequence(s)
      AK032641, AK051108
      Consensus CDS
      CCDS26174.1
      UniProtKB/Swiss-Prot
      Q8BH83
      Related
      ENSMUSP00000120816.2, ENSMUST00000128353.8
      Conserved Domains (2) summary
      sd00045
      Location:157188
      ANK; ANK repeat [structural motif]
      pfam13857
      Location:156197
      Ank_5; Ankyrin repeats (many copies)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      110942854..110945516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516294.5XP_006516357.1  ankyrin repeat domain-containing protein 9 isoform X1

      See identical proteins and their annotated locations for XP_006516357.1

      UniProtKB/Swiss-Prot
      Q8BH83
      Conserved Domains (2) summary
      sd00045
      Location:157188
      ANK; ANK repeat [structural motif]
      pfam13857
      Location:156197
      Ank_5; Ankyrin repeats (many copies)
    2. XM_030246958.2XP_030102818.1  ankyrin repeat domain-containing protein 9 isoform X1

      Conserved Domains (2) summary
      sd00045
      Location:157188
      ANK; ANK repeat [structural motif]
      pfam13857
      Location:156197
      Ank_5; Ankyrin repeats (many copies)
    3. XM_030246957.2XP_030102817.1  ankyrin repeat domain-containing protein 9 isoform X1

      Conserved Domains (2) summary
      sd00045
      Location:157188
      ANK; ANK repeat [structural motif]
      pfam13857
      Location:156197
      Ank_5; Ankyrin repeats (many copies)
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