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    Rbm26 RNA binding motif protein 26 [ Mus musculus (house mouse) ]

    Gene ID: 74213, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rbm26provided by MGI
    Official Full Name
    RNA binding motif protein 26provided by MGI
    Primary source
    MGI:MGI:1921463
    See related
    Ensembl:ENSMUSG00000022119 Vega:OTTMUSG00000035210
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C86225; Se70-2; MLZ-393; Pro1777; AI447318; 1700009P03Rik; C230097K14Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 9.9), limb E14.5 (RPKM 8.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rbm26 in Genome Data Viewer
    Location:
    14; 14 E2.3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (105114519..105177327, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (105513736..105576544, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA D130009I18 gene Neighboring gene PRP38 pre-mRNA processing factor 38 domain containing A pseudogene Neighboring gene predicted gene 17066 Neighboring gene plastin 3 (T-isoform) pseudogene Neighboring gene Nedd4 family interacting protein 2 Neighboring gene ribosomal protein L17 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of RNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    RNA-binding protein 26
    Names
    cutaneous T-cell lymphoma tumor antigen se70-2
    protein expressed in male leptotene and zygotene spermatocytes 393

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134077.4NP_598838.3  RNA-binding protein 26

      Status: PROVISIONAL

      Source sequence(s)
      AC113125, AC146601, AK139077, BU147816, DV652992
      Consensus CDS
      CCDS37003.1
      UniProtKB/Swiss-Prot
      Q6NZN0
      UniProtKB/TrEMBL
      E9PUF4
      Related
      ENSMUSP00000097901.3, OTTMUSP00000049036, ENSMUST00000100327.9, OTTMUST00000089685
      Conserved Domains (6) summary
      smart00356
      Location:294314
      ZnF_C3H1; zinc finger
      cd12258
      Location:862933
      RRM2_RBM26_like; RNA recognition motif 2 of vertebrate RNA-binding protein 26 (RBM26) and similar proteins
      cd12516
      Location:531606
      RRM1_RBM26; RNA recognition motif 1 of vertebrate RNA-binding protein 26 (RBM26)
      pfam08648
      Location:132165
      DUF1777; Protein of unknown function (DUF1777)
      pfam13864
      Location:714795
      Enkurin; Calmodulin-binding
      cl02562
      Location:1176
      PWI; PWI domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      105114519..105177327 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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