Format

Send to:

Choose Destination
    • Showing Current items.

    Gtsf1 gametocyte specific factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 74174, updated on 12-Jun-2018

    Summary

    Official Symbol
    Gtsf1provided by MGI
    Official Full Name
    gametocyte specific factor 1provided by MGI
    Primary source
    MGI:MGI:1921424
    See related
    Ensembl:ENSMUSG00000022487 Vega:OTTMUSG00000034009
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cue110; 1700006H03Rik
    Expression
    Restricted expression toward testis adult (RPKM 121.4) See more
    Orthologs

    Genomic context

    See Gtsf1 in Genome Data Viewer
    Location:
    15; 15 F3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (103402458..103430446, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (103232889..103260858, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 385A Neighboring gene integrin alpha 5 (fibronectin receptor alpha) Neighboring gene microRNA 6963 Neighboring gene MARCKS-like 1, pseudogene 3 Neighboring gene gametocyte specific factor 2 Neighboring gene NCK associated protein 1 like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    gametocyte-specific factor 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028797.1NP_083073.1  gametocyte-specific factor 1

      See identical proteins and their annotated locations for NP_083073.1

      Status: VALIDATED

      Source sequence(s)
      AK005675, BU945975, CO812705
      Consensus CDS
      CCDS49744.1
      UniProtKB/Swiss-Prot
      Q9DAN6
      Related
      ENSMUSP00000023129.8, OTTMUSP00000046425, ENSMUST00000023129.14, OTTMUST00000085854
      Conserved Domains (1) summary
      pfam05253
      Location:1538
      zf-U11-48K; U11-48K-like CHHC zinc finger

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      103402458..103430446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011245749.2XP_011244051.1  gametocyte-specific factor 1 isoform X1

      See identical proteins and their annotated locations for XP_011244051.1

      UniProtKB/Swiss-Prot
      Q9DAN6
      Related
      ENSMUSP00000114244.1, OTTMUSP00000046428, ENSMUST00000153930.7, OTTMUST00000085857
      Conserved Domains (1) summary
      pfam05253
      Location:1538
      zf-U11-48K; U11-48K-like CHHC zinc finger
    2. XM_011245751.1XP_011244053.1  gametocyte-specific factor 1 isoform X1

      See identical proteins and their annotated locations for XP_011244053.1

      UniProtKB/Swiss-Prot
      Q9DAN6
      Related
      ENSMUSP00000119234.1, OTTMUSP00000046429, ENSMUST00000141364.7, OTTMUST00000085858
      Conserved Domains (1) summary
      pfam05253
      Location:1538
      zf-U11-48K; U11-48K-like CHHC zinc finger
    3. XM_006521491.2XP_006521554.1  gametocyte-specific factor 1 isoform X1

      See identical proteins and their annotated locations for XP_006521554.1

      UniProtKB/Swiss-Prot
      Q9DAN6
      Related
      ENSMUSP00000120797.1, OTTMUSP00000046427, ENSMUST00000147389.7, OTTMUST00000085856
      Conserved Domains (1) summary
      pfam05253
      Location:1538
      zf-U11-48K; U11-48K-like CHHC zinc finger
    4. XM_011245750.2XP_011244052.1  gametocyte-specific factor 1 isoform X1

      See identical proteins and their annotated locations for XP_011244052.1

      UniProtKB/Swiss-Prot
      Q9DAN6
      Related
      ENSMUSP00000116366.1, OTTMUSP00000046426, ENSMUST00000136480.7, OTTMUST00000085855
      Conserved Domains (1) summary
      pfam05253
      Location:1538
      zf-U11-48K; U11-48K-like CHHC zinc finger
    Support Center