Format

Send to:

Choose Destination
    • Showing Current items.

    Lyrm1 LYR motif containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 73919, updated on 23-Jun-2021

    Summary

    Official Symbol
    Lyrm1provided by MGI
    Official Full Name
    LYR motif containing 1provided by MGI
    Primary source
    MGI:MGI:1921169
    See related
    Ensembl:ENSMUSG00000030922
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110065L10Rik; 2310004B22Rik; 4930404J24Rik
    Expression
    Broad expression in testis adult (RPKM 3.1), CNS E18 (RPKM 0.8) and 16 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lyrm1 in Genome Data Viewer
    Location:
    7; 7 F2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (119495038..119515979)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (119895713..119916756)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (127039806..127060264)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase medium-chain family member 3 Neighboring gene exoribonuclease 2 Neighboring gene RNA exonuclease 5 Neighboring gene DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) Neighboring gene dynein, axonemal, heavy chain 3 Neighboring gene predicted gene, 53369 Neighboring gene predicted gene, 25217

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in midbody ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    LYR motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001285959.1NP_001272888.1  LYR motif-containing protein 1

      See identical proteins and their annotated locations for NP_001272888.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AC131702, BU757765, BY464772, DV043140
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q9CQB7
      Related
      ENSMUSP00000102128.2, ENSMUST00000106518.9
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    2. NM_001285960.1NP_001272889.1  LYR motif-containing protein 1

      See identical proteins and their annotated locations for NP_001272889.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AC131702, BU757765, BY464772, DV043140
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q9CQB7
      Related
      ENSMUSP00000146699.2, ENSMUST00000208202.2
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    3. NM_001285961.2NP_001272890.1  LYR motif-containing protein 1

      See identical proteins and their annotated locations for NP_001272890.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AC131702, AK009135, AK015083, BY752674
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q9CQB7
      Related
      ENSMUSP00000051616.4, ENSMUST00000054440.11
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    4. NM_029610.3NP_083886.1  LYR motif-containing protein 1

      See identical proteins and their annotated locations for NP_083886.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3, and 4 all encode the same protein.
      Source sequence(s)
      AK009135, BY464772
      Consensus CDS
      CCDS21790.1
      UniProtKB/Swiss-Prot
      Q9CQB7
      Related
      ENSMUSP00000102127.2, ENSMUST00000106517.9
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    RNA

    1. NR_126475.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) contains an alternate first exon and lacks an internal exon compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AC131702

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      119495038..119515979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508239.5XP_006508302.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508302.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    2. XM_006508240.4XP_006508303.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508303.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    3. XM_006508237.4XP_006508300.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508300.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    4. XM_006508244.4XP_006508307.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508307.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    5. XM_006508243.4XP_006508306.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508306.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    6. XM_006508238.4XP_006508301.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508301.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    7. XM_036153480.1XP_036009373.1  LYR motif-containing protein 1 isoform X1

      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    8. XM_006508241.4XP_006508304.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508304.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    9. XM_006508234.5XP_006508297.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508297.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    10. XM_006508235.5XP_006508298.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508298.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    11. XM_006508236.5XP_006508299.1  LYR motif-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006508299.1

      UniProtKB/Swiss-Prot
      Q9CQB7
      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins
    12. XM_036153479.1XP_036009372.1  LYR motif-containing protein 1 isoform X1

      Conserved Domains (1) summary
      cd20261
      Location:883
      Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_104377.1: Suppressed sequence

      Description
      NR_104377.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Support Center