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    Fam161a family with sequence similarity 161, member A [ Mus musculus (house mouse) ]

    Gene ID: 73873, updated on 9-Sep-2018

    Summary

    Official Symbol
    Fam161aprovided by MGI
    Official Full Name
    family with sequence similarity 161, member Aprovided by MGI
    Primary source
    MGI:MGI:1921123
    See related
    Ensembl:ENSMUSG00000049811 Vega:OTTMUSG00000005271
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930430E16Rik
    Expression
    Biased expression in testis adult (RPKM 9.3), bladder adult (RPKM 2.2) and 6 other tissues See more
    Orthologs

    Genomic context

    See Fam161a in Genome Data Viewer
    Location:
    11; 11 A3.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (23006692..23045743)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (22913387..22923741)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene COMM domain containing 1 Neighboring gene zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 Neighboring gene chaperonin containing Tcp1, subunit 4 (delta) Neighboring gene predicted gene 12059 Neighboring gene predicted gene, 39610

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (3) 

    General gene information

    Homology

    Clone Names

    • MGC31583

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    microtubule binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    cilium organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cilium organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of protein acetylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    astral microtubule ISO
    Inferred from Sequence Orthology
    more info
     
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    centriole IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with ciliary basal body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ciliary basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with ciliary basal body ISO
    Inferred from Sequence Orthology
    more info
     
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic spindle ISO
    Inferred from Sequence Orthology
    more info
     
    mitotic spindle pole ISO
    Inferred from Sequence Orthology
    more info
     
    photoreceptor cell cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor connecting cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    photoreceptor connecting cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor connecting cilium ISO
    Inferred from Sequence Orthology
    more info
     
    photoreceptor inner segment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor inner segment ISO
    Inferred from Sequence Orthology
    more info
     
    spindle microtubule ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001363282.1NP_001350211.1  protein FAM161A isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL691470, BX001008
      Conserved Domains (1) summary
      pfam10595
      Location:230399
      UPF0564; Uncharacterized protein family UPF0564
    2. NM_001363283.1NP_001350212.1  protein FAM161A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL691470, BX001008
      Conserved Domains (1) summary
      pfam10595
      Location:150319
      UPF0564; Uncharacterized protein family UPF0564
    3. NM_001363284.1NP_001350213.1  protein FAM161A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK133447, AL691470
      Conserved Domains (1) summary
      pfam10595
      Location:150319
      UPF0564; Uncharacterized protein family UPF0564
    4. NM_028672.3NP_082948.2  protein FAM161A isoform 2

      See identical proteins and their annotated locations for NP_082948.2

      Status: VALIDATED

      Source sequence(s)
      AL691470, BC026495, BQ032025
      Consensus CDS
      CCDS48757.1
      UniProtKB/Swiss-Prot
      Q8QZV6
      UniProtKB/TrEMBL
      B1AVK0
      Related
      ENSMUSP00000063091.8, OTTMUSP00000053675, ENSMUST00000058269.8
      Conserved Domains (1) summary
      pfam10595
      Location:150319
      UPF0564; Uncharacterized protein family UPF0564

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      23006692..23045743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011243762.2XP_011242064.1  protein FAM161A isoform X5

      See identical proteins and their annotated locations for XP_011242064.1

      Conserved Domains (1) summary
      pfam10595
      Location:150503
      UPF0564; uncharacterized protein family UPF0564
    2. XM_006514838.3XP_006514901.1  protein FAM161A isoform X5

      See identical proteins and their annotated locations for XP_006514901.1

      Conserved Domains (1) summary
      pfam10595
      Location:150503
      UPF0564; uncharacterized protein family UPF0564
    3. XM_011243760.2XP_011242062.1  protein FAM161A isoform X7

      Conserved Domains (2) summary
      PHA03307
      Location:392518
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam10595
      Location:230399
      UPF0564; uncharacterized protein family UPF0564
    4. XM_006514828.3XP_006514891.1  protein FAM161A isoform X1

      Conserved Domains (1) summary
      pfam10595
      Location:230583
      UPF0564; uncharacterized protein family UPF0564
    5. XM_006514829.3XP_006514892.1  protein FAM161A isoform X2

      Conserved Domains (1) summary
      pfam10595
      Location:230582
      UPF0564; uncharacterized protein family UPF0564
    6. XM_006514830.3XP_006514893.1  protein FAM161A isoform X3

      Conserved Domains (1) summary
      pfam10595
      Location:230399
      UPF0564; uncharacterized protein family UPF0564
    7. XM_006514831.3XP_006514894.1  protein FAM161A isoform X4

      Conserved Domains (1) summary
      pfam10595
      Location:230399
      UPF0564; uncharacterized protein family UPF0564
    8. XM_011243761.2XP_011242063.1  protein FAM161A isoform X8

      Conserved Domains (1) summary
      pfam10595
      Location:230399
      UPF0564; uncharacterized protein family UPF0564
    9. XM_006514837.3XP_006514900.1  protein FAM161A isoform X6

      Conserved Domains (1) summary
      pfam10595
      Location:230399
      UPF0564; Uncharacterized protein family UPF0564
    10. XM_006514834.2XP_006514897.1  protein FAM161A isoform X5

      See identical proteins and their annotated locations for XP_006514897.1

      Conserved Domains (1) summary
      pfam10595
      Location:150503
      UPF0564; uncharacterized protein family UPF0564
    11. XM_006514832.2XP_006514895.1  protein FAM161A isoform X5

      See identical proteins and their annotated locations for XP_006514895.1

      Conserved Domains (1) summary
      pfam10595
      Location:150503
      UPF0564; uncharacterized protein family UPF0564
    12. XM_006514839.1XP_006514902.1  protein FAM161A isoform X9

      UniProtKB/TrEMBL
      B1AVK0
      Related
      ENSMUSP00000105184.2, OTTMUSP00000005440, ENSMUST00000109557.8, OTTMUST00000011744
      Conserved Domains (1) summary
      pfam10595
      Location:150319
      UPF0564; Uncharacterized protein family UPF0564
    13. XM_006514833.2XP_006514896.1  protein FAM161A isoform X5

      See identical proteins and their annotated locations for XP_006514896.1

      Conserved Domains (1) summary
      pfam10595
      Location:150503
      UPF0564; uncharacterized protein family UPF0564
    14. XM_017314799.1XP_017170288.1  protein FAM161A isoform X5

      Conserved Domains (1) summary
      pfam10595
      Location:150503
      UPF0564; uncharacterized protein family UPF0564
    15. XM_006514836.3XP_006514899.1  protein FAM161A isoform X5

      See identical proteins and their annotated locations for XP_006514899.1

      Related
      ENSMUSP00000146368.1, OTTMUSP00000075351, ENSMUST00000208732.1, OTTMUST00000144578
      Conserved Domains (1) summary
      pfam10595
      Location:150503
      UPF0564; uncharacterized protein family UPF0564

    RNA

    1. XR_001780067.1 RNA Sequence

    2. XR_001780066.1 RNA Sequence

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