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    Dppa3 developmental pluripotency-associated 3 [ Mus musculus (house mouse) ]

    Gene ID: 73708, updated on 31-Aug-2021

    Summary

    Official Symbol
    Dppa3provided by MGI
    Official Full Name
    developmental pluripotency-associated 3provided by MGI
    Primary source
    MGI:MGI:1920958
    See related
    Ensembl:ENSMUSG00000046323
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    st; PGC; PCG7; PGC7; Stella; 2410075G02Rik
    Expression
    Low expression observed in reference dataset See more
    Orthologs
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    Genomic context

    See Dppa3 in Genome Data Viewer
    Location:
    6; 6 F1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (122603383..122607230)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (122626424..122630271)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (122576442..122580289)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 Neighboring gene growth differentiation factor 3 Neighboring gene Dppa3 promoter region Neighboring gene small nucleolar RNA SNORA48 Neighboring gene predicted gene 8460

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC117617, MGC130308, MGC130309

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables methylated histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables methylated histone binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in female pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT located_in male pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in male pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    developmental pluripotency-associated protein 3
    Names
    compaction-associated protein 1
    primordial germ cell 7
    primordial germ cell protein 7

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_139218.1NP_631964.1  developmental pluripotency-associated protein 3

      See identical proteins and their annotated locations for NP_631964.1

      Status: PROVISIONAL

      Source sequence(s)
      AY082485
      Consensus CDS
      CCDS20500.1
      UniProtKB/Swiss-Prot
      Q8QZY3
      Related
      ENSMUSP00000062832.3, ENSMUST00000049644.9
      Conserved Domains (1) summary
      pfam15549
      Location:3146
      PGC7_Stella; PGC7/Stella/Dppa3 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      122603383..122607230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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