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    Dppa3 developmental pluripotency-associated 3 [ Mus musculus (house mouse) ]

    Gene ID: 73708, updated on 19-Feb-2019

    Summary

    Official Symbol
    Dppa3provided by MGI
    Official Full Name
    developmental pluripotency-associated 3provided by MGI
    Primary source
    MGI:MGI:1920958
    See related
    Ensembl:ENSMUSG00000046323
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PCG7; PGC7; Stella; 2410075G02Rik
    Expression
    Low expression observed in reference dataset See more
    Orthologs

    Genomic context

    See Dppa3 in Genome Data Viewer
    Location:
    6; 6 F1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (122626424..122630271)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (122576442..122580289)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 Neighboring gene growth differentiation factor 3 Neighboring gene predicted gene 8460 Neighboring gene 40S ribosomal protein S2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • MGC117617, MGC130308, MGC130309

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    methylated histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    methylated histone binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic cleavage IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of DNA demethylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of DNA demethylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protection of DNA demethylation of female pronucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protection of DNA demethylation of female pronucleus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of genetic imprinting IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of genetic imprinting IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    female pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    male pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT male pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    developmental pluripotency-associated protein 3
    Names
    compaction-associated protein 1
    primordial germ cell 7
    primordial germ cell protein 7

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_139218.1NP_631964.1  developmental pluripotency-associated protein 3

      See identical proteins and their annotated locations for NP_631964.1

      Status: PROVISIONAL

      Source sequence(s)
      AY082485
      Consensus CDS
      CCDS20500.1
      UniProtKB/Swiss-Prot
      Q8QZY3
      Related
      ENSMUSP00000062832.2, ENSMUST00000049644.8
      Conserved Domains (1) summary
      pfam15549
      Location:3146
      PGC7_Stella; PGC7/Stella/Dppa3 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      122626424..122630271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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