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    Cplane1 ciliogenesis and planar polarity effector 1 [ Mus musculus (house mouse) ]

    Gene ID: 73692, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cplane1provided by MGI
    Official Full Name
    ciliogenesis and planar polarity effector 1provided by MGI
    Primary source
    MGI:MGI:1920942
    See related
    Ensembl:ENSMUSG00000039801
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hug; Jbts1; Jbts17; b2b012C; b2b012Clo; 2410089E03Rik; 4732468D17Rik
    Expression
    Broad expression in CNS E18 (RPKM 7.5), testis adult (RPKM 7.0) and 21 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cplane1 in Genome Data Viewer
    Location:
    15; 15 A1
    Exon count:
    54
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (8198509..8300642)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (8169025..8271158)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (8119106..8221158)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 70 Neighboring gene ribosomal protein L19, pseudogene 6 Neighboring gene nucleoporin 155 Neighboring gene predicted gene, 46494 Neighboring gene predicted gene, 24144 Neighboring gene predicted gene, 41265 Neighboring gene NIPBL cohesin loading factor Neighboring gene uncharacterized LOC102634078 Neighboring gene predicted gene, 31282

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1) 
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in ciliary transition zone IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in ciliary transition zone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ciliogenesis and planar polarity effector 1
    Names
    protein C5orf42 homolog
    protein JBTS17
    transmembrane protein ENSP00000382582 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162906.1NP_001156378.1  ciliogenesis and planar polarity effector 1

      See identical proteins and their annotated locations for NP_001156378.1

      Status: VALIDATED

      Source sequence(s)
      AC107747, AK028897, BC058107, BE952071, CA752449, CF540306, CN536226
      Consensus CDS
      CCDS49578.1
      UniProtKB/Swiss-Prot
      Q8CE72
      Related
      ENSMUSP00000106247.2, ENSMUST00000110617.2
      Conserved Domains (1) summary
      pfam15392
      Location:28943204
      Joubert; Joubert syndrome-associated

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      8198509..8300642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519999.4XP_006520062.1  ciliogenesis and planar polarity effector 1 isoform X3

      Conserved Domains (1) summary
      pfam15392
      Location:28963206
      Joubert; Joubert syndrome-associated
    2. XM_006520000.4XP_006520063.1  ciliogenesis and planar polarity effector 1 isoform X5

      Conserved Domains (1) summary
      pfam15392
      Location:28643174
      Joubert; Joubert syndrome-associated
    3. XM_030248795.2XP_030104655.1  ciliogenesis and planar polarity effector 1 isoform X6

      Conserved Domains (1) summary
      pfam15392
      Location:28383148
      Joubert; Joubert syndrome-associated
    4. XM_006519998.4XP_006520061.1  ciliogenesis and planar polarity effector 1 isoform X2

      Conserved Domains (1) summary
      pfam15392
      Location:29193229
      Joubert; Joubert syndrome-associated
    5. XM_036159618.1XP_036015511.1  ciliogenesis and planar polarity effector 1 isoform X4

      Conserved Domains (1) summary
      pfam15392
      Location:29003203
      Joubert; Joubert syndrome-associated
    6. XM_030248797.2XP_030104657.1  ciliogenesis and planar polarity effector 1 isoform X7

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    7. XM_006520001.4XP_006520064.1  ciliogenesis and planar polarity effector 1 isoform X7

      See identical proteins and their annotated locations for XP_006520064.1

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    8. XM_006520002.4XP_006520065.1  ciliogenesis and planar polarity effector 1 isoform X7

      See identical proteins and their annotated locations for XP_006520065.1

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    9. XM_011245336.4XP_011243638.1  ciliogenesis and planar polarity effector 1 isoform X7

      See identical proteins and their annotated locations for XP_011243638.1

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    10. XM_011245335.3XP_011243637.1  ciliogenesis and planar polarity effector 1 isoform X1

      See identical proteins and their annotated locations for XP_011243637.1

      Conserved Domains (1) summary
      pfam15392
      Location:29273230
      Joubert; Joubert syndrome-associated
    11. XM_030248798.2XP_030104658.1  ciliogenesis and planar polarity effector 1 isoform X7

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    12. XM_030248799.2XP_030104659.1  ciliogenesis and planar polarity effector 1 isoform X7

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    13. XM_030248796.2XP_030104656.1  ciliogenesis and planar polarity effector 1 isoform X7

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    14. XM_036159619.1XP_036015512.1  ciliogenesis and planar polarity effector 1 isoform X7

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    15. XM_006519997.4XP_006520060.1  ciliogenesis and planar polarity effector 1 isoform X1

      See identical proteins and their annotated locations for XP_006520060.1

      Conserved Domains (1) summary
      pfam15392
      Location:29273230
      Joubert; Joubert syndrome-associated
    16. XM_030248801.2XP_030104661.1  ciliogenesis and planar polarity effector 1 isoform X7

      Conserved Domains (1) summary
      pfam15392
      Location:25092812
      Joubert; Joubert syndrome-associated
    17. XM_036159616.1XP_036015509.1  ciliogenesis and planar polarity effector 1 isoform X1

      Conserved Domains (1) summary
      pfam15392
      Location:29273230
      Joubert; Joubert syndrome-associated
    18. XM_036159617.1XP_036015510.1  ciliogenesis and planar polarity effector 1 isoform X1

      Conserved Domains (1) summary
      pfam15392
      Location:29273230
      Joubert; Joubert syndrome-associated

    RNA

    1. XR_004938875.1 RNA Sequence

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