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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001361928.1 → NP_001348857.1 HMG box-containing protein 1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
CT010463
- UniProtKB/Swiss-Prot
- Q3V0I4, Q8BUS3, Q8C199, Q8R316
- UniProtKB/TrEMBL
-
Q3UTR1
- Conserved Domains (2) summary
-
- smart00536
Location:214 → 340
- AXH; domain in Ataxins and HMG containing proteins
- cd01388
Location:435 → 506
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
NM_153198.3 → NP_694878.2 HMG box-containing protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AK132503, AK133127, CT010463
- Consensus CDS
-
CCDS25867.2
- UniProtKB/TrEMBL
- E9Q1A8, Q3UTR1
- Related
- ENSMUSP00000131158.3, ENSMUST00000172314.9
- Conserved Domains (2) summary
-
- smart00536
Location:224 → 350
- AXH; domain in Ataxins and HMG containing proteins
- cd01388
Location:445 → 516
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
-
NM_177993.4 → NP_818774.2 HMG box-containing protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR and 3' coding region, compared to variant 1. It encodes isoform 2, which has a shorter C-terminus, compared to isoform 1.
- Source sequence(s)
-
AK028674, AK133127
- Consensus CDS
-
CCDS25868.2
- UniProtKB/TrEMBL
- E9Q469, Q3UQS1
- Related
- ENSMUSP00000131983.3, ENSMUST00000167458.9
- Conserved Domains (2) summary
-
- smart00536
Location:224 → 350
- AXH; domain in Ataxins and HMG containing proteins
- cl00082
Location:445 → 474
- HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000078.7 Reference GRCm39 C57BL/6J
- Range
-
31976449..32000529 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036157627.1 → XP_036013520.1 HMG box-containing protein 1 isoform X5
- UniProtKB/TrEMBL
-
Q3UTR1
- Conserved Domains (2) summary
-
- cd01388
Location:370 → 441
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam08517
Location:190 → 272
- AXH; Ataxin-1 and HBP1 module (AXH)
-
XM_030246951.2 → XP_030102811.1 HMG box-containing protein 1 isoform X3
- UniProtKB/Swiss-Prot
- Q3V0I4, Q8BUS3, Q8C199, Q8R316
- UniProtKB/TrEMBL
-
Q3UTR1
- Conserved Domains (2) summary
-
- smart00536
Location:214 → 340
- AXH; domain in Ataxins and HMG containing proteins
- cd01388
Location:435 → 506
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_036157626.1 → XP_036013519.1 HMG box-containing protein 1 isoform X4
- UniProtKB/TrEMBL
-
Q3UTR1
- Conserved Domains (2) summary
-
- cd01388
Location:370 → 441
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam08517
Location:190 → 272
- AXH; Ataxin-1 and HBP1 module (AXH)
-
XM_006515227.4 → XP_006515290.1 HMG box-containing protein 1 isoform X1
- UniProtKB/TrEMBL
-
Q3UTR1
- Conserved Domains (2) summary
-
- smart00536
Location:224 → 350
- AXH; domain in Ataxins and HMG containing proteins
- cd01388
Location:445 → 516
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_006515229.5 → XP_006515292.1 HMG box-containing protein 1 isoform X2
- UniProtKB/TrEMBL
-
Q3UTR1
- Conserved Domains (2) summary
-
- smart00536
Location:214 → 340
- AXH; domain in Ataxins and HMG containing proteins
- cd01388
Location:435 → 506
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_006515228.5 → XP_006515291.1 HMG box-containing protein 1 isoform X2
- UniProtKB/TrEMBL
-
Q3UTR1
- Conserved Domains (2) summary
-
- smart00536
Location:214 → 340
- AXH; domain in Ataxins and HMG containing proteins
- cd01388
Location:435 → 506
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...