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    Fam118a family with sequence similarity 118, member A [ Mus musculus (house mouse) ]

    Gene ID: 73225, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fam118aprovided by MGI
    Official Full Name
    family with sequence similarity 118, member Aprovided by MGI
    Primary source
    MGI:MGI:1920475
    See related
    Ensembl:ENSMUSG00000022434
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in testis adult (RPKM 12.6), bladder adult (RPKM 8.8) and 27 other tissues See more
    Orthologs

    Genomic context

    See Fam118a in Genome Data Viewer
    Location:
    15; 15 E2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (85037017..85116936)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (84867492..84893260)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene SET translocation pseudogene Neighboring gene uroplakin 3A Neighboring gene structural maintenance of chromosomes 1B Neighboring gene ribosomal protein L23A pseudogene Neighboring gene RIB43A domain with coiled-coils 2 Neighboring gene predicted gene, 19277

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Clone Names

    • 3110048E14Rik, C230014M12Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356616.1NP_001343545.1  protein FAM118A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL772308
      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain
    2. NM_001356617.1NP_001343546.1  protein FAM118A isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL772308
      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain
    3. NM_001356618.1NP_001343547.1  protein FAM118A isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL772308
      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain
    4. NM_133750.4NP_598511.1  protein FAM118A isoform 2

      See identical proteins and their annotated locations for NP_598511.1

      Status: VALIDATED

      Source sequence(s)
      BC066174, CJ084461
      Consensus CDS
      CCDS27717.1
      UniProtKB/Swiss-Prot
      Q91YN1
      Related
      ENSMUSP00000023069.7, ENSMUST00000023069.8
      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      85037017..85116936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521474.3XP_006521537.1  protein FAM118A isoform X1

      See identical proteins and their annotated locations for XP_006521537.1

      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    2. XM_006521476.3XP_006521539.1  protein FAM118A isoform X1

      See identical proteins and their annotated locations for XP_006521539.1

      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    3. XM_011245743.2XP_011244045.1  protein FAM118A isoform X2

      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    4. XM_006521478.3XP_006521541.1  protein FAM118A isoform X3

      See identical proteins and their annotated locations for XP_006521541.1

      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain
    5. XM_006521481.3XP_006521544.1  protein FAM118A isoform X4

      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    6. XM_006521482.3XP_006521545.1  protein FAM118A isoform X5

      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    7. XM_017316757.1XP_017172246.1  protein FAM118A isoform X6

      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain
    8. XM_006521475.3XP_006521538.1  protein FAM118A isoform X1

      See identical proteins and their annotated locations for XP_006521538.1

      Conserved Domains (1) summary
      pfam13289
      Location:149254
      SIR2_2; SIR2-like domain
    9. XM_006521483.2XP_006521546.1  protein FAM118A isoform X7

      UniProtKB/Swiss-Prot
      Q91YN1
      Related
      ENSMUSP00000154985.1, ENSMUST00000229203.1
      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain
    10. XM_006521479.3XP_006521542.1  protein FAM118A isoform X3

      See identical proteins and their annotated locations for XP_006521542.1

      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain
    11. XM_006521480.3XP_006521543.1  protein FAM118A isoform X3

      See identical proteins and their annotated locations for XP_006521543.1

      Conserved Domains (1) summary
      pfam13289
      Location:142247
      SIR2_2; SIR2-like domain

    RNA

    1. XR_001781570.1 RNA Sequence

    2. XR_384052.3 RNA Sequence

    3. XR_001781571.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177067.3: Suppressed sequence

      Description
      NM_177067.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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