Format

Send to:

Choose Destination
    • Showing Current items.

    3110009E18Rik RIKEN cDNA 3110009E18 gene [ Mus musculus (house mouse) ]

    Gene ID: 73103, updated on 31-Jan-2019

    Summary

    Official Symbol
    3110009E18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 3110009E18 geneprovided by MGI
    Primary source
    MGI:MGI:1920353
    See related
    Ensembl:ENSMUSG00000026388
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in liver adult (RPKM 17.5), CNS E14 (RPKM 2.7) and 1 other tissue See more
    Orthologs

    Genomic context

    See 3110009E18Rik in Genome Data Viewer
    Location:
    1; 1 E2.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (120121115..120188190)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (122017764..122084766)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41938 Neighboring gene diazepam binding inhibitor Neighboring gene STEAP family member 3 Neighboring gene complement component 1, q subcomponent-like 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0538 protein C2orf76 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001172074.1NP_001165545.1  UPF0538 protein C2orf76 homolog isoform 2

      See identical proteins and their annotated locations for NP_001165545.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) skips an alternate exon in the 3' coding region resulting in a frameshift, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK014026, BC028767
      Consensus CDS
      CCDS48342.1
      UniProtKB/Swiss-Prot
      Q9CRW3
      Related
      ENSMUSP00000027637.6, ENSMUST00000027637.12
      Conserved Domains (1) summary
      pfam10209
      Location:878
      DUF2340; Uncharacterized conserved protein (DUF2340)
    2. NM_028439.2NP_082715.1  UPF0538 protein C2orf76 homolog isoform 1

      See identical proteins and their annotated locations for NP_082715.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK014026, BC028767
      Consensus CDS
      CCDS15232.1
      UniProtKB/Swiss-Prot
      Q9CRW3
      Related
      ENSMUSP00000108263.2, ENSMUST00000112644.8
      Conserved Domains (1) summary
      pfam10209
      Location:8122
      DUF2340; Uncharacterized conserved protein (DUF2340)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      120121115..120188190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006529893.2XP_006529956.1  UPF0538 protein C2orf76 homolog isoform X2

      Conserved Domains (1) summary
      pfam10209
      Location:898
      DUF2340; Uncharacterized conserved protein (DUF2340)
    2. XM_017312451.1XP_017167940.1  UPF0538 protein C2orf76 homolog isoform X1

    3. XM_017312453.1XP_017167942.1  UPF0538 protein C2orf76 homolog isoform X4

    4. XM_017312452.1XP_017167941.1  UPF0538 protein C2orf76 homolog isoform X3

    Support Center