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    Lrrc47 leucine rich repeat containing 47 [ Mus musculus (house mouse) ]

    Gene ID: 72946, updated on 9-Sep-2018

    Summary

    Official Symbol
    Lrrc47provided by MGI
    Official Full Name
    leucine rich repeat containing 47provided by MGI
    Primary source
    MGI:MGI:1920196
    See related
    Ensembl:ENSMUSG00000029028 Vega:OTTMUSG00000010507
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA960559; mKIAA1185; 2900010D03Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 63.9), thymus adult (RPKM 42.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Lrrc47 in Genome Data Viewer
    Location:
    4; 4 E2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (154011803..154021512)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (153385912..153395621)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene centrosomal protein 104 Neighboring gene predicted gene, 42361 Neighboring gene predicted gene, 31566 Neighboring gene small integral membrane protein 1 Neighboring gene predicted gene, 31672 Neighboring gene coiled-coil domain containing 27 Neighboring gene transformation related protein 73

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to phenylalanine-tRNA ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    leucine-rich repeat-containing protein 47

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201226.1NP_957678.1  leucine-rich repeat-containing protein 47

      See identical proteins and their annotated locations for NP_957678.1

      Status: VALIDATED

      Source sequence(s)
      AK013512, AK129306, BU148242, BU514662
      Consensus CDS
      CCDS19006.1
      UniProtKB/Swiss-Prot
      Q505F5
      UniProtKB/TrEMBL
      B1AX98
      Related
      ENSMUSP00000030894.8, ENSMUST00000030894.14
      Conserved Domains (4) summary
      smart00873
      Location:332504
      B3_4; B3/4 domain
      cd00116
      Location:34260
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:5478
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:77143
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      154011803..154021512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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