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    Fam98a family with sequence similarity 98, member A [ Mus musculus (house mouse) ]

    Gene ID: 72722, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fam98aprovided by MGI
    Official Full Name
    family with sequence similarity 98, member Aprovided by MGI
    Primary source
    MGI:MGI:1919972
    See related
    Ensembl:ENSMUSG00000002017
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AL024114; 2810405J04Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 23.3), placenta adult (RPKM 15.0) and 24 other tissues See more
    Orthologs

    Genomic context

    See Fam98a in Genome Data Viewer
    Location:
    17; 17 E2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (75537086..75551946, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (75936426..75951286, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene latent transforming growth factor beta binding protein 1 Neighboring gene ribosomal protein L19 pseudogene Neighboring gene RAS, guanyl releasing protein 3 Neighboring gene lactate dehydrogenase A pseudogene Neighboring gene predicted gene, 46584

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein methyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    lysosome localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of ruffle assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein methylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    tRNA-splicing ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357860.1NP_001344789.1  protein FAM98A isoform 2

      Status: VALIDATED

      Source sequence(s)
      CT010501
      Conserved Domains (1) summary
      pfam10239
      Location:3132
      DUF2465; Protein of unknown function (DUF2465)
    2. NM_133747.2NP_598508.2  protein FAM98A isoform 1

      See identical proteins and their annotated locations for NP_598508.2

      Status: VALIDATED

      Source sequence(s)
      AK167224, BY382397, CJ047600
      Consensus CDS
      CCDS28974.2
      UniProtKB/Swiss-Prot
      Q3TJZ6
      Related
      ENSMUSP00000108126.3, ENSMUST00000112507.3
      Conserved Domains (1) summary
      pfam10239
      Location:11327
      DUF2465; Protein of unknown function (DUF2465)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      75537086..75551946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317659.1XP_017173148.1  protein FAM98A isoform X1

      Conserved Domains (1) summary
      pfam10239
      Location:3132
      DUF2465; Protein of unknown function (DUF2465)
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