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    Zfp518a zinc finger protein 518A [ Mus musculus (house mouse) ]

    Gene ID: 72672, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfp518aprovided by MGI
    Official Full Name
    zinc finger protein 518Aprovided by MGI
    Primary source
    MGI:MGI:1919922
    See related
    Ensembl:ENSMUSG00000049164
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zfp51; Zfp518; Znf518; Znf518a; AI426493; mKIAA0335; 2810401C22Rik; 6330417C12Rik
    Expression
    Broad expression in placenta adult (RPKM 4.6), CNS E11.5 (RPKM 2.4) and 22 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Zfp518a in Genome Data Viewer
    Location:
    19 C3; 19
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (40882472..40906391)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (40894031..40917947)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (40969195..40992437)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene cyclin J Neighboring gene RIKEN cDNA E030044B06 gene Neighboring gene uncharacterized LOC108168428 Neighboring gene microRNA 8092 Neighboring gene B cell linker Neighboring gene RIKEN cDNA C330026H20 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0335

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein 518A
    Names
    zinc finger protein 518

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028319.1NP_082595.1  zinc finger protein 518A

      See identical proteins and their annotated locations for NP_082595.1

      Status: VALIDATED

      Source sequence(s)
      AC117253, AK041506, CK618936
      Consensus CDS
      CCDS37982.1
      UniProtKB/Swiss-Prot
      B2RRF6
      Related
      ENSMUSP00000055956.7, ENSMUST00000050092.7
      Conserved Domains (1) summary
      sd00017
      Location:211231
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      40882472..40906391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247359.4XP_011245661.1  zinc finger protein 518A isoform X1

      See identical proteins and their annotated locations for XP_011245661.1

      UniProtKB/Swiss-Prot
      B2RRF6
      Conserved Domains (1) summary
      sd00017
      Location:211231
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_011247363.3XP_011245665.1  zinc finger protein 518A isoform X1

      See identical proteins and their annotated locations for XP_011245665.1

      UniProtKB/Swiss-Prot
      B2RRF6
      Conserved Domains (1) summary
      sd00017
      Location:211231
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. XM_036161699.1XP_036017592.1  zinc finger protein 518A isoform X1

      Conserved Domains (1) summary
      sd00017
      Location:211231
      ZF_C2H2; C2H2 Zn finger [structural motif]
    4. XM_011247364.3XP_011245666.1  zinc finger protein 518A isoform X1

      See identical proteins and their annotated locations for XP_011245666.1

      UniProtKB/Swiss-Prot
      B2RRF6
      Conserved Domains (1) summary
      sd00017
      Location:211231
      ZF_C2H2; C2H2 Zn finger [structural motif]
    5. XM_011247360.3XP_011245662.1  zinc finger protein 518A isoform X1

      See identical proteins and their annotated locations for XP_011245662.1

      UniProtKB/Swiss-Prot
      B2RRF6
      Conserved Domains (1) summary
      sd00017
      Location:211231
      ZF_C2H2; C2H2 Zn finger [structural motif]
    6. XM_011247361.2XP_011245663.1  zinc finger protein 518A isoform X1

      See identical proteins and their annotated locations for XP_011245663.1

      UniProtKB/Swiss-Prot
      B2RRF6
      Conserved Domains (1) summary
      sd00017
      Location:211231
      ZF_C2H2; C2H2 Zn finger [structural motif]
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