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    Tmem209 transmembrane protein 209 [ Mus musculus (house mouse) ]

    Gene ID: 72649, updated on 22-Aug-2021

    Summary

    Official Symbol
    Tmem209provided by MGI
    Official Full Name
    transmembrane protein 209provided by MGI
    Primary source
    MGI:MGI:1919899
    See related
    Ensembl:ENSMUSG00000029782
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI428435; 2700094F01Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 9.1), placenta adult (RPKM 7.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tmem209 in Genome Data Viewer
    Location:
    6; 6 A3.3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (30480806..30509786, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (30481022..30509787, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (30431233..30459706, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene kelch domain containing 10 Neighboring gene RIKEN cDNA 1700012C14 gene Neighboring gene serine-rich single-pass membrane protein 1 Neighboring gene predicted gene, 53278 Neighboring gene carboxypeptidase A2, pancreatic

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311093.1NP_001298022.1  transmembrane protein 209 isoform 2

      See identical proteins and their annotated locations for NP_001298022.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and uses a downstream start codon, compared to variant 1. It encodes isoform 2, which has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      BC052187, BC057109, BY780525
      Consensus CDS
      CCDS80511.1
      UniProtKB/Swiss-Prot
      Q8BRG8
      Related
      ENSMUSP00000110810.2, ENSMUST00000115157.8
      Conserved Domains (1) summary
      pfam09786
      Location:5559
      CytochromB561_N; Cytochrome B561, N terminal
    2. NM_001347087.1NP_001334016.1  transmembrane protein 209 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at a downstream AUG and result in an isoform (3) with a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AC155848
      Consensus CDS
      CCDS85026.1
      UniProtKB/TrEMBL
      Q8C214
      Related
      ENSMUSP00000138232.2, ENSMUST00000151187.8
      Conserved Domains (1) summary
      cl39050
      Location:2402
      BAT2_N; BAT2 N-terminus
    3. NM_178625.4NP_848740.3  transmembrane protein 209 isoform 1

      See identical proteins and their annotated locations for NP_848740.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      BC057109, BY780525
      Consensus CDS
      CCDS19972.1
      UniProtKB/Swiss-Prot
      Q8BRG8
      Related
      ENSMUSP00000110813.4, ENSMUST00000115160.10
      Conserved Domains (1) summary
      pfam09786
      Location:6560
      CytochromB561_N; Cytochrome B561, N terminal

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      30480806..30509786 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505172.4XP_006505235.1  transmembrane protein 209 isoform X3

      Conserved Domains (1) summary
      cl39050
      Location:6516
      BAT2_N; BAT2 N-terminus
    2. XM_017321766.3XP_017177255.1  transmembrane protein 209 isoform X4

      UniProtKB/TrEMBL
      Q8C214
      Conserved Domains (1) summary
      cl39050
      Location:2402
      BAT2_N; BAT2 N-terminus
    3. XM_006505170.5XP_006505233.2  transmembrane protein 209 isoform X1

      UniProtKB/Swiss-Prot
      Q8BRG8
      Conserved Domains (1) summary
      pfam09786
      Location:5559
      CytochromB561_N; Cytochrome B561, N terminal
    4. XM_006505171.3XP_006505234.1  transmembrane protein 209 isoform X2

      Conserved Domains (1) summary
      pfam09786
      Location:15569
      CytochromB561_N; Cytochrome B561, N terminal
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