Format

Send to:

Choose Destination
    • Showing Current items.

    Pdzd11 PDZ domain containing 11 [ Mus musculus (house mouse) ]

    Gene ID: 72621, updated on 8-Aug-2021

    Summary

    Official Symbol
    Pdzd11provided by MGI
    Official Full Name
    PDZ domain containing 11provided by MGI
    Primary source
    MGI:MGI:1919871
    See related
    Ensembl:ENSMUSG00000015668
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pdzk1; Pdzk11; AI854765; 1810012H22Rik; 2310079D11Rik; 2700099C19Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 23.4), placenta adult (RPKM 20.4) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Pdzd11 in Genome Data Viewer
    Location:
    X; X C3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (99665949..99673667, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (100622871..100625948, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (97818245..97821246, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene pyrimidinergic receptor P2Y, G-protein coupled, 4 Neighboring gene arrestin 3, retinal Neighboring gene kinesin family member 4 Neighboring gene predicted gene, 52438 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in maintenance of epithelial cell apical/basal polarity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in neurotransmitter secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in pore complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in pore complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein localization to basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in basolateral plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cell-cell junction IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    part_of pore complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    part_of pore complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    PDZ domain-containing protein 11

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356384.1NP_001343313.1  PDZ domain-containing protein 11

      Status: VALIDATED

      Source sequence(s)
      AK007454, BP772832, BX276129, CB316786
      Consensus CDS
      CCDS30304.1
      Related
      ENSMUSP00000015812.6, ENSMUST00000015812.12
      Conserved Domains (1) summary
      cd00992
      Location:45125
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    2. NM_028303.4NP_082579.1  PDZ domain-containing protein 11

      See identical proteins and their annotated locations for NP_082579.1

      Status: VALIDATED

      Source sequence(s)
      AK012624, BP772832, BX276129
      Consensus CDS
      CCDS30304.1
      UniProtKB/Swiss-Prot
      Q9CZG9
      Related
      ENSMUSP00000051068.7, ENSMUST00000059099.7
      Conserved Domains (1) summary
      cd00992
      Location:45125
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      99665949..99673667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162102.1XP_036017995.1  PDZ domain-containing protein 11 isoform X1

      Conserved Domains (1) summary
      cd00992
      Location:45125
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    2. XM_011247685.2XP_011245987.1  PDZ domain-containing protein 11 isoform X1

      See identical proteins and their annotated locations for XP_011245987.1

      UniProtKB/Swiss-Prot
      Q9CZG9
      Conserved Domains (1) summary
      cd00992
      Location:45125
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    Support Center