Format

Send to:

Choose Destination
    • Showing Current items.

    Lin9 lin-9 homolog (C. elegans) [ Mus musculus (house mouse) ]

    Gene ID: 72568, updated on 12-Aug-2018

    Summary

    Official Symbol
    Lin9provided by MGI
    Official Full Name
    lin-9 homolog (C. elegans)provided by MGI
    Primary source
    MGI:MGI:1919818
    See related
    Ensembl:ENSMUSG00000058729 Vega:OTTMUSG00000050451
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TGS; Bara; TGS1; Lin-9; mLin-9; 2700022J23Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 4.0), placenta adult (RPKM 3.7) and 26 other tissues See more
    Orthologs

    Genomic context

    See Lin9 in Genome Data Viewer
    Location:
    1; 1 H4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (180641150..180690687)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (182571465..182620818)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 31986 Neighboring gene poly (ADP-ribose) polymerase family, member 1 Neighboring gene microRNA 6904 Neighboring gene Mix1 homeobox-like 1 (Xenopus laevis) Neighboring gene predicted gene 8101

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    reproduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcriptional repressor complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein lin-9 homolog
    Names
    TUDOR gene similar 1 protein
    type I interferon receptor beta chain-associated protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103182.2NP_001096652.2  protein lin-9 homolog

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the functional protein.
      Source sequence(s)
      AC167020, BC069181, BC088992
      Consensus CDS
      CCDS48468.2
      UniProtKB/TrEMBL
      A0A0A6YVZ7
      Related
      ENSMUSP00000141331.1, OTTMUSP00000068945, ENSMUST00000192561.5, OTTMUST00000128012
      Conserved Domains (1) summary
      pfam06584
      Location:143247
      DIRP; DIRP

    RNA

    1. NR_120498.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site at an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC167020, BC088992
      Related
      ENSMUST00000193892.5, OTTMUST00000128016

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      180641150..180690687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496988.3XP_006497051.1  protein lin-9 homolog isoform X1

      See identical proteins and their annotated locations for XP_006497051.1

      Conserved Domains (1) summary
      pfam06584
      Location:75179
      DIRP; DIRP
    2. XM_006496987.1XP_006497050.1  protein lin-9 homolog isoform X1

      See identical proteins and their annotated locations for XP_006497050.1

      Conserved Domains (1) summary
      pfam06584
      Location:75179
      DIRP; DIRP

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175186.4: Suppressed sequence

      Description
      NM_175186.4: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Support Center