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    Wdr89 WD repeat domain 89 [ Mus musculus (house mouse) ]

    Gene ID: 72338, updated on 23-Jun-2021

    Summary

    Official Symbol
    Wdr89provided by MGI
    Official Full Name
    WD repeat domain 89provided by MGI
    Primary source
    MGI:MGI:1919588
    See related
    Ensembl:ENSMUSG00000045690
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2600001A11Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 32.8), liver E14 (RPKM 30.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Wdr89 in Genome Data Viewer
    Location:
    12; 12 C3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (75677368..75716311, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (75630594..75669537, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (76731581..76770524, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2, regulatory subunit B', epsilon Neighboring gene predicted gene, 34666 Neighboring gene ribosomal protein, large P2, pseudogene 1 Neighboring gene predicted gene, 40890 Neighboring gene sphingosine-1-phosphate phosphatase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    • Chemically induced (ENU) (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC67964

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    WD repeat-containing protein 89

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028203.1NP_082479.1  WD repeat-containing protein 89

      See identical proteins and their annotated locations for NP_082479.1

      Status: VALIDATED

      Source sequence(s)
      AC124742
      Consensus CDS
      CCDS49090.1
      UniProtKB/Swiss-Prot
      Q9D0R9
      Related
      ENSMUSP00000050532.8, ENSMUST00000062370.9
      Conserved Domains (3) summary
      COG2319
      Location:65348
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:74111
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:38348
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      75677368..75716311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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