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    Zbed3 zinc finger, BED type containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 72114, updated on 24-Apr-2022

    Summary

    Official Symbol
    Zbed3provided by MGI
    Official Full Name
    zinc finger, BED type containing 3provided by MGI
    Primary source
    MGI:MGI:1919364
    See related
    Ensembl:ENSMUSG00000041995 AllianceGenome:MGI:1919364
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU018975; AU024588; 0610037K01Rik; 2610005H11Rik
    Summary
    This gene encodes a member of the zinc finger protein superfamily. This protein may regulate the Wnt/beta-catenin signaling pathway. This protein may be involved in insulin resistance and type 2 diabetes in humans. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]
    Expression
    Broad expression in ovary adult (RPKM 63.5), limb E14.5 (RPKM 22.0) and 22 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Zbed3 in Genome Data Viewer
    Location:
    13; 13 D1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (95460113..95474350)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (95323605..95337842)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (96095192..96107796)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 41 Neighboring gene predicted gene, 48350 Neighboring gene phosphodiesterase 8B Neighboring gene predicted gene, 41025 Neighboring gene small nucleolar RNA, H/ACA box 47 Neighboring gene predicted gene, 22661 Neighboring gene predicted gene, 53806 Neighboring gene angiogenic factor with G patch and FHA domains 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger BED domain-containing protein 3
    Names
    axin-interacting protein
    zinc finger, BED domain containing 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001302538.1NP_001289467.1  zinc finger BED domain-containing protein 3

      See identical proteins and their annotated locations for NP_001289467.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AK162164, AK162256, BC085478
      Consensus CDS
      CCDS26696.1
      UniProtKB/Swiss-Prot
      Q9D0L1
      UniProtKB/TrEMBL
      Q3TSB2
      Related
      ENSMUSP00000152153.2, ENSMUST00000221807.2
      Conserved Domains (2) summary
      smart00614
      Location:3791
      ZnF_BED; BED zinc finger
      PRK12704
      Location:136189
      PRK12704; phosphodiesterase; Provisional
    2. NM_001302539.1NP_001289468.1  zinc finger BED domain-containing protein 3

      See identical proteins and their annotated locations for NP_001289468.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC133188, AK162164, BC085478, BY093894
      Consensus CDS
      CCDS26696.1
      UniProtKB/Swiss-Prot
      Q9D0L1
      UniProtKB/TrEMBL
      Q3TSB2
      Conserved Domains (2) summary
      smart00614
      Location:3791
      ZnF_BED; BED zinc finger
      PRK12704
      Location:136189
      PRK12704; phosphodiesterase; Provisional
    3. NM_028106.3NP_082382.1  zinc finger BED domain-containing protein 3

      See identical proteins and their annotated locations for NP_082382.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AK011319, AK162164, BC085478, BU709250, BY776906, BY776946
      Consensus CDS
      CCDS26696.1
      UniProtKB/Swiss-Prot
      Q9D0L1
      UniProtKB/TrEMBL
      Q3TSB2
      Related
      ENSMUSP00000044774.8, ENSMUST00000045909.8
      Conserved Domains (2) summary
      smart00614
      Location:3791
      ZnF_BED; BED zinc finger
      PRK12704
      Location:136189
      PRK12704; phosphodiesterase; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      95460113..95474350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247416.2XP_030103276.1  zinc finger BED domain-containing protein 3 isoform X1

      Conserved Domains (2) summary
      smart00614
      Location:3791
      ZnF_BED; BED zinc finger
      PRK12704
      Location:136189
      PRK12704; phosphodiesterase; Provisional