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    Slc35f2 solute carrier family 35, member F2 [ Mus musculus (house mouse) ]

    Gene ID: 72022, updated on 27-Jan-2018

    Summary

    Official Symbol
    Slc35f2provided by MGI
    Official Full Name
    solute carrier family 35, member F2provided by MGI
    Primary source
    MGI:MGI:1919272
    See related
    Ensembl:ENSMUSG00000042195 Vega:OTTMUSG00000063194
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU019213; 1500009K05Rik
    Expression
    Biased expression in genital fat pad adult (RPKM 29.1), large intestine adult (RPKM 19.0) and 12 other tissues See more
    Orthologs

    Genomic context

    See Slc35f2 in Genome Data Viewer
    Location:
    9; 9 A5.3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (53771220..53818161)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (53619342..53665968)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene cullin 5 Neighboring gene predicted gene 16124 Neighboring gene ribosomal protein S6, pseudogene 3 Neighboring gene RAB39, member RAS oncogene family Neighboring gene sarcolipin Neighboring gene SIVA1, apoptosis-inducing factor pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    solute carrier family 35 member F2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028060.3NP_082336.3  solute carrier family 35 member F2

      See identical proteins and their annotated locations for NP_082336.3

      Status: VALIDATED

      Source sequence(s)
      AK005182, BB729203, CD551889, CD554029
      Consensus CDS
      CCDS40639.1
      UniProtKB/Swiss-Prot
      Q7TML3
      Related
      ENSMUSP00000046528.8, OTTMUSP00000079590, ENSMUST00000048670.9, OTTMUST00000153872
      Conserved Domains (3) summary
      pfam00892
      Location:196331
      EamA; EamA-like transporter family
      pfam06027
      Location:35334
      SLC35F; Solute carrier family 35
      cl23754
      Location:74240
      EamA; EamA-like transporter family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      53771220..53818161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511461.3XP_006511524.1  solute carrier family 35 member F2 isoform X2

      Conserved Domains (3) summary
      pfam00892
      Location:209344
      EamA; EamA-like transporter family
      pfam06027
      Location:48347
      SLC35F; Solute carrier family 35
      cl23754
      Location:87253
      EamA; EamA-like transporter family
    2. XM_006511460.2XP_006511523.1  solute carrier family 35 member F2 isoform X1

      Conserved Domains (3) summary
      pfam00892
      Location:251386
      EamA; EamA-like transporter family
      pfam06027
      Location:92389
      SLC35F; Solute carrier family 35
      cl23754
      Location:129295
      EamA; EamA-like transporter family
    3. XM_006511462.3XP_006511525.1  solute carrier family 35 member F2 isoform X3

      Conserved Domains (3) summary
      pfam00892
      Location:149284
      EamA; EamA-like transporter family
      pfam06027
      Location:1287
      SLC35F; Solute carrier family 35
      cl23754
      Location:33193
      EamA; EamA-like transporter family
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