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    Tedc2 tubulin epsilon and delta complex 2 [ Mus musculus (house mouse) ]

    Gene ID: 72016, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tedc2provided by MGI
    Official Full Name
    tubulin epsilon and delta complex 2provided by MGI
    Primary source
    MGI:MGI:1919266
    See related
    Ensembl:ENSMUSG00000024118
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1600002H07Rik
    Expression
    Ubiquitous expression in liver adult (RPKM 18.6), liver E14.5 (RPKM 10.5) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tedc2 in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (24434028..24439825, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (24215054..24220934, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (24351999..24357714, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit C Neighboring gene TBC1 domain family, member 24 Neighboring gene netrin 3 Neighboring gene cyclin F Neighboring gene microRNA 5134 Neighboring gene microRNA 6965

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of smoothened signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centriole IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    tubulin epsilon and delta complex protein 2
    Names
    uncharacterized protein C16orf59 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028056.2NP_082332.1  tubulin epsilon and delta complex protein 2

      See identical proteins and their annotated locations for NP_082332.1

      Status: VALIDATED

      Source sequence(s)
      AK005395, BC072612
      Consensus CDS
      CCDS28479.1
      UniProtKB/Swiss-Prot
      Q6GQV0
      Related
      ENSMUSP00000024930.8, ENSMUST00000024930.8
      Conserved Domains (1) summary
      pfam15764
      Location:150434
      DUF4693; Domain of unknown function (DUF4693)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      24434028..24439825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011246632.4XP_011244934.1  tubulin epsilon and delta complex protein 2 isoform X1

      Conserved Domains (1) summary
      pfam15764
      Location:150389
      DUF4693; Domain of unknown function (DUF4693)
    2. XM_030250058.2XP_030105918.1  tubulin epsilon and delta complex protein 2 isoform X2

      Conserved Domains (1) summary
      pfam15764
      Location:1249
      DUF4693; Domain of unknown function (DUF4693)
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