Format

Send to:

Choose Destination
    • Showing Current items.

    Ddx28 DEAD box helicase 28 [ Mus musculus (house mouse) ]

    Gene ID: 71986, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ddx28provided by MGI
    Official Full Name
    DEAD box helicase 28provided by MGI
    Primary source
    MGI:MGI:1919236
    See related
    Ensembl:ENSMUSG00000045538
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mddx28; AI449652; 2410004K13Rik
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ddx28 in Genome Data Viewer
    Location:
    8; 8 D3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (106736248..106738118, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (106009616..106011486, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (108533516..108535386, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene dipeptidase 3 Neighboring gene predicted gene, 22972 Neighboring gene dipeptidase 2 Neighboring gene dihydrouridine synthase 2 Neighboring gene nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 Neighboring gene RIKEN cDNA 1810019D21 gene Neighboring gene epithelial splicing regulatory protein 2

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables rRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial large ribosomal subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in mitochondrial large ribosomal subunit assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial nucleoid ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ribonucleoprotein granule ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    probable ATP-dependent RNA helicase DDX28
    Names
    ATP-dependent RNA helicase Ddx28
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
    DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 28
    mitochondrial DEAD box protein 28
    NP_082314.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028038.3NP_082314.2  probable ATP-dependent RNA helicase DDX28

      See identical proteins and their annotated locations for NP_082314.2

      Status: VALIDATED

      Source sequence(s)
      AC133499, AK163480, BC120582
      Consensus CDS
      CCDS22626.1
      UniProtKB/Swiss-Prot
      Q9CWT6
      Related
      ENSMUSP00000058950.6, ENSMUST00000058579.7
      Conserved Domains (3) summary
      PRK01297
      Location:28539
      PRK01297; ATP-dependent RNA helicase RhlB; Provisional
      pfam00271
      Location:376492
      Helicase_C; Helicase conserved C-terminal domain
      cl21455
      Location:128343
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      106736248..106738118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center