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    Rbpms2 RNA binding protein with multiple splicing 2 [ Mus musculus (house mouse) ]

    Gene ID: 71973, updated on 23-May-2018

    Summary

    Official Symbol
    Rbpms2provided by MGI
    Official Full Name
    RNA binding protein with multiple splicing 2provided by MGI
    Primary source
    MGI:MGI:1919223
    See related
    Ensembl:ENSMUSG00000032387 Vega:OTTMUSG00000062640
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI316523; 2400008B06Rik
    Expression
    Broad expression in kidney adult (RPKM 74.7), adrenal adult (RPKM 48.4) and 21 other tissues See more
    Orthologs

    Genomic context

    See Rbpms2 in Genome Data Viewer
    Location:
    9; 9 C
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (65629335..65660536)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (65478389..65508325)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene PIF1 5'-to-3' DNA helicase Neighboring gene predicted pseudogene 10144 Neighboring gene ornithine decarboxylase antizyme 2 Neighboring gene zinc finger protein 609 Neighboring gene predicted gene, 30089

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    snRNA stem-loop binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of smooth muscle cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of smooth muscle cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RNA-binding protein with multiple splicing 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028030.3NP_082306.2  RNA-binding protein with multiple splicing 2

      See identical proteins and their annotated locations for NP_082306.2

      Status: PROVISIONAL

      Source sequence(s)
      AC121979
      Consensus CDS
      CCDS23296.1
      UniProtKB/Swiss-Prot
      Q8VC52
      Related
      ENSMUSP00000057600.8, OTTMUSP00000079078, ENSMUST00000055844.9, OTTMUST00000152575
      Conserved Domains (1) summary
      cd12683
      Location:2499
      RRM_RBPMS2; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      65629335..65660536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511456.3XP_006511519.1  RNA-binding protein with multiple splicing 2 isoform X1

      See identical proteins and their annotated locations for XP_006511519.1

      UniProtKB/Swiss-Prot
      Q8VC52
      Conserved Domains (1) summary
      cd12683
      Location:2499
      RRM_RBPMS2; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)
    2. XM_006511455.2XP_006511518.1  RNA-binding protein with multiple splicing 2 isoform X1

      See identical proteins and their annotated locations for XP_006511518.1

      UniProtKB/Swiss-Prot
      Q8VC52
      Related
      ENSMUSP00000131076.1, OTTMUSP00000079077, ENSMUST00000169003.7, OTTMUST00000152574
      Conserved Domains (1) summary
      cd12683
      Location:2499
      RRM_RBPMS2; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)
    3. XM_006511457.2XP_006511520.1  RNA-binding protein with multiple splicing 2 isoform X1

      See identical proteins and their annotated locations for XP_006511520.1

      UniProtKB/Swiss-Prot
      Q8VC52
      Conserved Domains (1) summary
      cd12683
      Location:2499
      RRM_RBPMS2; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)
    4. XM_006511458.3XP_006511521.1  RNA-binding protein with multiple splicing 2 isoform X1

      See identical proteins and their annotated locations for XP_006511521.1

      UniProtKB/Swiss-Prot
      Q8VC52
      Conserved Domains (1) summary
      cd12683
      Location:2499
      RRM_RBPMS2; RNA recognition motif in vertebrate RNA-binding protein with multiple splicing 2 (RBP-MS2)
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