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    Cdca4 cell division cycle associated 4 [ Mus musculus (house mouse) ]

    Gene ID: 71963, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cdca4provided by MGI
    Official Full Name
    cell division cycle associated 4provided by MGI
    Primary source
    MGI:MGI:1919213
    See related
    Ensembl:ENSMUSG00000047832
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HEPP; SEI-3; 2410018C03Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 31.9), CNS E11.5 (RPKM 24.0) and 27 other tissues See more
    Orthologs

    Genomic context

    See Cdca4 in Genome Data Viewer
    Location:
    12; 12 F1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (112820229..112829516, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (114058445..114067600, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene AHNAK nucleoprotein 2 Neighboring gene clathrin binding box of aftiphilin containing 1 Neighboring gene predicted gene, 40588 Neighboring gene G protein-coupled receptor 132 Neighboring gene predicted gene, 30461 Neighboring gene RIKEN cDNA 1700127F24 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Clone Names

    • 2410018C03Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cell division cycle-associated protein 4
    Names
    hematopoietic progenitor protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001359234.1NP_001346163.1  cell division cycle-associated protein 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the shortest transcript. All variants encode the same protein.
      Source sequence(s)
      AF322238, AK010535, BY199153
      Conserved Domains (1) summary
      pfam06031
      Location:3368
      SERTA; SERTA motif
    2. NM_001359292.1NP_001346221.1  cell division cycle-associated protein 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 2. All variants encode the same protein.
      Source sequence(s)
      AC160929, AF322238, BY201887
      Conserved Domains (1) summary
      pfam06031
      Location:3368
      SERTA; SERTA motif
    3. NM_028023.4NP_082299.1  cell division cycle-associated protein 4

      See identical proteins and their annotated locations for NP_082299.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 2. All variants encode the same protein.
      Source sequence(s)
      AC160929, AF322238
      Consensus CDS
      CCDS26198.1
      UniProtKB/Swiss-Prot
      Q9CWM2
      Related
      ENSMUSP00000058901.5, ENSMUST00000062092.6
      Conserved Domains (1) summary
      pfam06031
      Location:3368
      SERTA; SERTA motif

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      112820229..112829516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516244.1XP_006516307.1  cell division cycle-associated protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006516307.1

      UniProtKB/Swiss-Prot
      Q9CWM2
      Related
      ENSMUSP00000152315.1, ENSMUST00000220899.1
      Conserved Domains (1) summary
      pfam06031
      Location:3368
      SERTA; SERTA motif
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