Format

Send to:

Choose Destination
    • Showing Current items.

    Apol6 apolipoprotein L 6 [ Mus musculus (house mouse) ]

    Gene ID: 71939, updated on 23-Jun-2021

    Summary

    Official Symbol
    Apol6provided by MGI
    Official Full Name
    apolipoprotein L 6provided by MGI
    Primary source
    MGI:MGI:1919189
    See related
    Ensembl:ENSMUSG00000033576
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310076O14Rik
    Expression
    Biased expression in subcutaneous fat pad adult (RPKM 49.6), genital fat pad adult (RPKM 29.2) and 4 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Apol6 in Genome Data Viewer
    Location:
    15; 15 D3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76929195..76941308)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (77045050..77057108)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (76875505..76887538)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52199 Neighboring gene VISTA enhancer mm106 Neighboring gene myoglobin Neighboring gene predicted gene, 24753 Neighboring gene predicted gene, 53899 Neighboring gene RNA binding protein, fox-1 homolog (C. elegans) 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables lipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163621.1NP_001157093.1  apolipoprotein L6 isoform 2

      See identical proteins and their annotated locations for NP_001157093.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR, and uses an alternate splice pattern in the 3' coding region, compared to variant 1. The resulting isoform (2) has a longer and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AI481097, AK144563, AL603843
      Consensus CDS
      CCDS49656.1
      UniProtKB/TrEMBL
      B7ZC55, Q3UN08
      Related
      ENSMUSP00000118257.2, ENSMUST00000127957.8
      Conserved Domains (1) summary
      pfam05461
      Location:18290
      ApoL; Apolipoprotein L
    2. NM_028010.1NP_082286.1  apolipoprotein L6 isoform 1

      See identical proteins and their annotated locations for NP_082286.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript but encodes the shorter isoform (1).
      Source sequence(s)
      AI481775, AK010208, AL603843
      Consensus CDS
      CCDS49655.1
      UniProtKB/TrEMBL
      B7ZC54, Q9D6L7
      Related
      ENSMUSP00000120866.2, ENSMUST00000149569.9
      Conserved Domains (1) summary
      pfam05461
      Location:26290
      ApoL; Apolipoprotein L

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      76929195..76941308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521421.5XP_006521484.1  apolipoprotein L6 isoform X2

      See identical proteins and their annotated locations for XP_006521484.1

      UniProtKB/TrEMBL
      B7ZC54
      Conserved Domains (1) summary
      pfam05461
      Location:26290
      ApoL; Apolipoprotein L
    2. XM_006521419.5XP_006521482.1  apolipoprotein L6 isoform X1

      See identical proteins and their annotated locations for XP_006521482.1

      UniProtKB/TrEMBL
      B7ZC55
      Conserved Domains (1) summary
      pfam05461
      Location:18290
      ApoL; Apolipoprotein L
    3. XM_006521420.5XP_006521483.1  apolipoprotein L6 isoform X1

      See identical proteins and their annotated locations for XP_006521483.1

      UniProtKB/TrEMBL
      B7ZC55
      Conserved Domains (1) summary
      pfam05461
      Location:18290
      ApoL; Apolipoprotein L
    Support Center