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    Tmem50a transmembrane protein 50A [ Mus musculus (house mouse) ]

    Gene ID: 71817, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tmem50aprovided by MGI
    Official Full Name
    transmembrane protein 50Aprovided by MGI
    Primary source
    MGI:MGI:1919067
    See related
    Ensembl:ENSMUSG00000028822
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CA; Sm; CAM; Smp1; 3200001F09Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 53.1), bladder adult (RPKM 51.4) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tmem50a in Genome Data Viewer
    Location:
    4 D3; 4 67.14 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (134625160..134642337, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (134897849..134915028, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (134453764..134470831, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene macoilin 1 Neighboring gene Rh blood group, D antigen Neighboring gene arginine/serine rich protein 1 Neighboring gene SYF2 homolog, RNA splicing factor (S. cerevisiae)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in glial cell projection IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in neuronal cell body IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    transmembrane protein 50A
    Names
    small membrane protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027935.2NP_082211.1  transmembrane protein 50A

      See identical proteins and their annotated locations for NP_082211.1

      Status: PROVISIONAL

      Source sequence(s)
      BC094256
      Consensus CDS
      CCDS18779.1
      UniProtKB/Swiss-Prot
      Q9CXL1
      UniProtKB/TrEMBL
      Q52KP1
      Related
      ENSMUSP00000030626.6, ENSMUST00000030626.12
      Conserved Domains (1) summary
      pfam05255
      Location:8156
      UPF0220; Uncharacterized protein family (UPF0220)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      134625160..134642337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539181.4XP_006539244.1  transmembrane protein 50A isoform X1

      See identical proteins and their annotated locations for XP_006539244.1

      UniProtKB/Swiss-Prot
      Q9CXL1
      UniProtKB/TrEMBL
      Q52KP1
      Related
      ENSMUSP00000101489.2, ENSMUST00000105863.2
      Conserved Domains (1) summary
      pfam05255
      Location:8156
      UPF0220; Uncharacterized protein family (UPF0220)
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