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    Nup93 nucleoporin 93 [ Mus musculus (house mouse) ]

    Gene ID: 71805, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nup93provided by MGI
    Official Full Name
    nucleoporin 93provided by MGI
    Primary source
    MGI:MGI:1919055
    See related
    Ensembl:ENSMUSG00000032939
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2410008G02Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 18.5), limb E14.5 (RPKM 14.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Nup93 in Genome Data Viewer
    Location:
    8; 8 C5
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (94941192..95054728)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (94214564..94328100)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (96738501..96838966)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118567560 Neighboring gene metallothionein 1 Neighboring gene ribosomal protein L10, pseudogene 5 Neighboring gene microRNA 138-2 Neighboring gene solute carrier family 12, member 3 Neighboring gene predicted gene 15889

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear periphery ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    nuclear pore complex protein Nup93
    Names
    93 kDa nucleoporin
    CBP-interacting protein 4
    nucleoporin Nup93

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357266.1NP_001344195.1  nuclear pore complex protein Nup93 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC131733, AK028864, AK167105
      Consensus CDS
      CCDS22540.1
      Related
      ENSMUSP00000078878.7, ENSMUST00000079961.14
      Conserved Domains (1) summary
      pfam04097
      Location:220802
      Nic96; Nup93/Nic96
    2. NM_001357267.1NP_001344196.1  nuclear pore complex protein Nup93 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC128663, AC131733
      Conserved Domains (1) summary
      pfam04097
      Location:97679
      Nic96; Nup93/Nic96
    3. NM_001357268.1NP_001344197.1  nuclear pore complex protein Nup93 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC128663, AK045380
      Consensus CDS
      CCDS90438.1
      Related
      ENSMUSP00000148458.2, ENSMUST00000211822.2
      Conserved Domains (1) summary
      pfam04097
      Location:97679
      Nic96; Nup93/Nic96
    4. NM_172410.3NP_765998.1  nuclear pore complex protein Nup93 isoform 1

      See identical proteins and their annotated locations for NP_765998.1

      Status: VALIDATED

      Source sequence(s)
      AC131733, AK028864
      Consensus CDS
      CCDS22540.1
      UniProtKB/Swiss-Prot
      Q8BJ71
      Related
      ENSMUSP00000148700.2, ENSMUST00000212824.2
      Conserved Domains (1) summary
      pfam04097
      Location:220802
      Nic96; Nup93/Nic96

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      94941192..95054728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531376.4XP_006531439.1  nuclear pore complex protein Nup93 isoform X1

      See identical proteins and their annotated locations for XP_006531439.1

      UniProtKB/Swiss-Prot
      Q8BJ71
      Conserved Domains (1) summary
      pfam04097
      Location:97679
      Nic96; Nup93/Nic96
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