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    Ptcd1 pentatricopeptide repeat domain 1 [ Mus musculus (house mouse) ]

    Gene ID: 71799, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ptcd1provided by MGI
    Official Full Name
    pentatricopeptide repeat domain 1provided by MGI
    Primary source
    MGI:MGI:1919049
    See related
    Ensembl:ENSMUSG00000029624
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110069M14Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 10.1), ovary adult (RPKM 8.7) and 28 other tissues See more
    Orthologs
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    Try the new Transcript table

    Genomic context

    See Ptcd1 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (145084188..145103914, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (145147378..145167104, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145908247..145927973, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex, subunit 1B Neighboring gene PDGFA associated protein 1 Neighboring gene BUD31 homolog Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    • Endonuclease-mediated (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC102367

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables tRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables tRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial translation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in tRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within tRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in mitochondrial matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in mitochondrial matrix ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    pentatricopeptide repeat-containing protein 1, mitochondrial

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133735.2NP_598496.3  pentatricopeptide repeat-containing protein 1, mitochondrial

      See identical proteins and their annotated locations for NP_598496.3

      Status: VALIDATED

      Source sequence(s)
      AC127411, BC083097
      Consensus CDS
      CCDS19858.1
      UniProtKB/Swiss-Prot
      Q8C2E4
      Related
      ENSMUSP00000031628.10, ENSMUST00000031628.10
      Conserved Domains (3) summary
      TIGR00756
      Location:174206
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:174200
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:551594
      PPR_2; PPR repeat family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      145084188..145103914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241013.4XP_011239315.1  pentatricopeptide repeat-containing protein 1, mitochondrial isoform X1

      Conserved Domains (3) summary
      PLN03218
      Location:125331
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:174200
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:174217
      PPR_2; PPR repeat family
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