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    Trnau1ap tRNA selenocysteine 1 associated protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 71787, updated on 23-Jun-2021

    Summary

    Official Symbol
    Trnau1approvided by MGI
    Official Full Name
    tRNA selenocysteine 1 associated protein 1provided by MGI
    Primary source
    MGI:MGI:1919037
    See related
    Ensembl:ENSMUSG00000028898
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tr; SECp; Secp43; Trspap1; AA387999; 1110007F05Rik; WI1-2643G14.2
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 7.1), CNS E11.5 (RPKM 6.9) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Trnau1ap in Genome Data Viewer
    Location:
    4 D2.3; 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (132039074..132058007, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (132311763..132330696, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (131867678..131885453, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 12 Neighboring gene small nucleolar RNA, H/ACA box 61 Neighboring gene small nucleolar RNA, C/D box 99 Neighboring gene regulator of chromosome condensation 1 Neighboring gene CRISPRi-validated cis-regulatory element for Rcc1 and Trnau1ap Neighboring gene small nucleolar RNA, H/ACA box 73b Neighboring gene small nucleolar RNA host gene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables tRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables tRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in selenocysteine incorporation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in selenocysteine incorporation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    tRNA selenocysteine 1-associated protein 1
    Names
    tRNA selenocysteine-associated protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027925.3NP_082201.2  tRNA selenocysteine 1-associated protein 1

      See identical proteins and their annotated locations for NP_082201.2

      Status: VALIDATED

      Source sequence(s)
      AK152986, BC099594, BY283216, CJ166630
      Consensus CDS
      CCDS18722.1
      UniProtKB/Swiss-Prot
      Q80VC6
      Related
      ENSMUSP00000030730.8, ENSMUST00000030730.14
      Conserved Domains (2) summary
      cd12610
      Location:487
      RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)
      cd12612
      Location:95176
      RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      132039074..132058007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539180.4XP_006539243.1  tRNA selenocysteine 1-associated protein 1 isoform X1

      Conserved Domains (2) summary
      cd12612
      Location:29110
      RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)
      pfam17654
      Location:139218
      Trnau1ap; Selenocysteine tRNA 1 associated proteins
    2. XM_011250332.3XP_011248634.1  tRNA selenocysteine 1-associated protein 1 isoform X2

      See identical proteins and their annotated locations for XP_011248634.1

      Related
      ENSMUST00000146166.8
      Conserved Domains (2) summary
      pfam17654
      Location:95174
      Trnau1ap; Selenocysteine tRNA 1 associated proteins
      cl17169
      Location:166
      RRM_SF; RNA recognition motif (RRM) superfamily
    3. XM_011250334.3XP_011248636.1  tRNA selenocysteine 1-associated protein 1 isoform X2

      See identical proteins and their annotated locations for XP_011248636.1

      Conserved Domains (2) summary
      pfam17654
      Location:95174
      Trnau1ap; Selenocysteine tRNA 1 associated proteins
      cl17169
      Location:166
      RRM_SF; RNA recognition motif (RRM) superfamily
    4. XM_030253783.2XP_030109643.1  tRNA selenocysteine 1-associated protein 1 isoform X2

      Conserved Domains (2) summary
      pfam17654
      Location:95174
      Trnau1ap; Selenocysteine tRNA 1 associated proteins
      cl17169
      Location:166
      RRM_SF; RNA recognition motif (RRM) superfamily
    5. XM_017320388.3XP_017175877.1  tRNA selenocysteine 1-associated protein 1 isoform X2

      Conserved Domains (2) summary
      pfam17654
      Location:95174
      Trnau1ap; Selenocysteine tRNA 1 associated proteins
      cl17169
      Location:166
      RRM_SF; RNA recognition motif (RRM) superfamily
    6. XM_030253782.2XP_030109642.1  tRNA selenocysteine 1-associated protein 1 isoform X2

      Conserved Domains (2) summary
      pfam17654
      Location:95174
      Trnau1ap; Selenocysteine tRNA 1 associated proteins
      cl17169
      Location:166
      RRM_SF; RNA recognition motif (RRM) superfamily
    7. XM_030253784.1XP_030109644.1  tRNA selenocysteine 1-associated protein 1 isoform X2

      Conserved Domains (2) summary
      pfam17654
      Location:95174
      Trnau1ap; Selenocysteine tRNA 1 associated proteins
      cl17169
      Location:166
      RRM_SF; RNA recognition motif (RRM) superfamily
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