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    Raver1 ribonucleoprotein, PTB-binding 1 [ Mus musculus (house mouse) ]

    Gene ID: 71766, updated on 23-Jun-2021

    Summary

    Official Symbol
    Raver1provided by MGI
    Official Full Name
    ribonucleoprotein, PTB-binding 1provided by MGI
    Primary source
    MGI:MGI:1919016
    See related
    Ensembl:ENSMUSG00000010205
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA050359; 1300006N24Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 87.3), duodenum adult (RPKM 68.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Raver1 in Genome Data Viewer
    Location:
    9; 9 A3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (20985454..21003295, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21074158..21091999, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (20878602..20896432, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene zinc finger, GATA-like protein 1 Neighboring gene predicted gene, 38431 Neighboring gene ferredoxin 2 Neighboring gene microRNA 7082 Neighboring gene tyrosine kinase 2 Neighboring gene cell division cycle 37 Neighboring gene predicted gene, 36118

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Readthrough Gm38431

    Readthrough gene: Gm38431, Included gene: Fdx2

    Homology

    Clone Names

    • KIAA1978, MGC118403

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ribonucleoprotein PTB-binding 1
    Names
    protein raver-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027911.4NP_082187.1  ribonucleoprotein PTB-binding 1

      See identical proteins and their annotated locations for NP_082187.1

      Status: VALIDATED

      Source sequence(s)
      AK138596, BC058271
      Consensus CDS
      CCDS40550.1
      UniProtKB/Swiss-Prot
      Q9CW46
      UniProtKB/TrEMBL
      A0A158RFV1
      Related
      ENSMUSP00000111150.2, ENSMUST00000115487.3
      Conserved Domains (3) summary
      cd12663
      Location:59129
      RRM1_RAVER1; RNA recognition motif 1 in vertebrate ribonucleoprotein PTB-binding 1 (raver-1)
      cd12667
      Location:219306
      RRM3_RAVER1; RNA recognition motif 3 in vertebrate ribonucleoprotein PTB-binding 1 (raver-1)
      cl17169
      Location:133209
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      20985454..21003295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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