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    Cdc40 cell division cycle 40 [ Mus musculus (house mouse) ]

    Gene ID: 71713, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cdc40provided by MGI
    Official Full Name
    cell division cycle 40provided by MGI
    Primary source
    MGI:MGI:1918963
    See related
    Ensembl:ENSMUSG00000038446
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EHB3; PRP17; 1200003H23Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 9.4), placenta adult (RPKM 7.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cdc40 in Genome Data Viewer
    Location:
    10; 10 B1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (40831621..40883143, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (40552699..40602949, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene D-aspartate oxidase Neighboring gene methyltransferase like 24 Neighboring gene WAS protein family, member 1 Neighboring gene sperm motility kinase-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    U2-type catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    catalytic step 2 spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    pre-mRNA-processing factor 17
    Names
    PRP17 homolog
    cell division cycle 40 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027879.2NP_082155.1  pre-mRNA-processing factor 17

      See identical proteins and their annotated locations for NP_082155.1

      Status: VALIDATED

      Source sequence(s)
      AA163414, AK004569, BC158078, BE691319
      Consensus CDS
      CCDS48546.1
      UniProtKB/Swiss-Prot
      Q9DC48
      Related
      ENSMUSP00000044305.7, ENSMUST00000044166.8
      Conserved Domains (2) summary
      cd00200
      Location:281579
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:292330
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      40831621..40883143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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