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    Vps35l VPS35 endosomal protein sorting factor like [ Mus musculus (house mouse) ]

    Gene ID: 71517, updated on 23-Jun-2021

    Summary

    Official Symbol
    Vps35lprovided by MGI
    Official Full Name
    VPS35 endosomal protein sorting factor likeprovided by MGI
    Primary source
    MGI:MGI:1918767
    See related
    Ensembl:ENSMUSG00000030982
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Vs; Vsp35l; 2610029J22Rik; 9030624J02Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 16.3), placenta adult (RPKM 15.9) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Vps35l in Genome Data Viewer
    Location:
    7; 7 F2
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (118339401..118440714)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (118740178..118841491)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (125883785..125985005)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase 1 Neighboring gene centriolar coiled coil protein 110 Neighboring gene predicted gene, 26147 Neighboring gene lysine rich nucleolar protein 1 Neighboring gene IQ motif containing K Neighboring gene G protein-coupled receptor, family C, group 5, member B Neighboring gene predicted gene, 39076

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in endocytic recycling IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in endocytic recycling ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    VPS35 endosomal protein-sorting factor-like; VPS35 endosomal protein sorting factor-like
    Names
    UPF0505 protein C16orf62 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027815.4NP_082091.3  VPS35 endosomal protein-sorting factor-like

      Status: VALIDATED

      Source sequence(s)
      BC054720, CF735981, CO426862
      Consensus CDS
      CCDS21776.2
      UniProtKB/Swiss-Prot
      Q8BWQ6
      UniProtKB/TrEMBL
      I1E4X5
      Related
      ENSMUSP00000051263.7, ENSMUST00000059390.13

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      118339401..118440714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508212.2XP_006508275.1  VPS35 endosomal protein sorting factor-like isoform X1

    RNA

    1. XR_378273.2 RNA Sequence

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