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    Vps35l VPS35 endosomal protein sorting factor like [ Mus musculus (house mouse) ]

    Gene ID: 71517, updated on 3-Feb-2019

    Summary

    Official Symbol
    Vps35lprovided by MGI
    Official Full Name
    VPS35 endosomal protein sorting factor likeprovided by MGI
    Primary source
    MGI:MGI:1918767
    See related
    Ensembl:ENSMUSG00000030982
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Vsp35l; 2610029J22Rik; 9030624J02Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 16.3), placenta adult (RPKM 15.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Vps35l in Genome Data Viewer
    Location:
    7; 7 F2
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (118740197..118841491)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (125883785..125985005)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase 1 Neighboring gene centriolar coiled coil protein 110 Neighboring gene lysine rich nucleolar protein 1 Neighboring gene IQ motif containing K Neighboring gene G protein-coupled receptor, family C, group 5, member B Neighboring gene predicted gene, 39076

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    Golgi to plasma membrane transport ISO
    Inferred from Sequence Orthology
    more info
     
    endocytic recycling ISO
    Inferred from Sequence Orthology
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    retrograde transport, endosome to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell ISO
    Inferred from Sequence Orthology
    more info
     
    endosome ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    UPF0505 protein C16orf62 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027815.4NP_082091.3  UPF0505 protein C16orf62 homolog

      Status: VALIDATED

      Source sequence(s)
      BC054720, CF735981, CO426862
      Consensus CDS
      CCDS21776.2
      UniProtKB/Swiss-Prot
      Q8BWQ6
      UniProtKB/TrEMBL
      I1E4X5
      Related
      ENSMUSP00000051263.6, ENSMUST00000059390.12

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      118740197..118841491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508212.1XP_006508275.1  UPF0505 protein C16orf62 homolog isoform X1

    RNA

    1. XR_378273.1 RNA Sequence

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