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    Obox1 oocyte specific homeobox 1 [ Mus musculus (house mouse) ]

    Gene ID: 71468, updated on 11-Apr-2024

    Summary

    Official Symbol
    Obox1provided by MGI
    Official Full Name
    oocyte specific homeobox 1provided by MGI
    Primary source
    MGI:MGI:1918718
    See related
    Ensembl:ENSMUSG00000054310 AllianceGenome:MGI:1918718
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    7420700M11Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in early conceptus; genitourinary system; heart; hemolymphoid system; and inner ear. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward ovary adult (RPKM 2.7) See more
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    Genomic context

    Location:
    7 A2; 7 8.5 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (15281182..15290771)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (15547257..15556846)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene oocyte specific homeobox 3, pseudogene 6 Neighboring gene oocyte specific homeobox 4, pseudogene 30 Neighboring gene oocyte specific homeobox 4, pseudogene 31 Neighboring gene predicted gene, 25354

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    oocyte-specific homeobox protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027802.2NP_082078.1  oocyte-specific homeobox protein 1

      See identical proteins and their annotated locations for NP_082078.1

      Status: PROVISIONAL

      Source sequence(s)
      AC189859
      Consensus CDS
      CCDS20837.1
      UniProtKB/Swiss-Prot
      G3UX03, Q9D350
      UniProtKB/TrEMBL
      A0AA74J9U6
      Related
      ENSMUSP00000067691.9, ENSMUST00000067288.15
      Conserved Domains (1) summary
      cd00086
      Location:95153
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      15281182..15290771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)