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    Foxn3 forkhead box N3 [ Mus musculus (house mouse) ]

    Gene ID: 71375, updated on 31-Jan-2019

    Summary

    Official Symbol
    Foxn3provided by MGI
    Official Full Name
    forkhead box N3provided by MGI
    Primary source
    MGI:MGI:1918625
    See related
    Ensembl:ENSMUSG00000033713
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ches1; Ches1l; HTLFL1; AA589593; AW556347; 5430426H20Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 10.2), bladder adult (RPKM 8.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Foxn3 in Genome Data Viewer
    Location:
    12; 12 E
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (99190081..99563809, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (100433304..100688284, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40554 Neighboring gene ribosomal protein L30, pseudogene 8 Neighboring gene RIKEN cDNA 4930474N09 gene Neighboring gene centromere protein W pseudogene Neighboring gene RIKEN cDNA 3300002A11 gene Neighboring gene predicted gene, 46371 Neighboring gene predicted gene, 26839 Neighboring gene RIKEN cDNA 1700064M15 gene Neighboring gene predicted gene, 35644

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC36260, MGC107530

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    craniofacial suture morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    forkhead box protein N3
    Names
    checkpoint suppressor 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183186.2NP_899009.2  forkhead box protein N3

      See identical proteins and their annotated locations for NP_899009.2

      Status: VALIDATED

      Source sequence(s)
      AI448353, AK046748, BE623611, BY717160
      Consensus CDS
      CCDS26103.1
      UniProtKB/Swiss-Prot
      Q499D0
      Related
      ENSMUSP00000082189.1, ENSMUST00000085108.7
      Conserved Domains (1) summary
      pfam00250
      Location:114200
      Forkhead; Forkhead domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      99190081..99563809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516239.3XP_006516302.1  forkhead box protein N3 isoform X3

      See identical proteins and their annotated locations for XP_006516302.1

      UniProtKB/Swiss-Prot
      Q499D0
      Conserved Domains (1) summary
      pfam00250
      Location:114200
      Forkhead; Forkhead domain
    2. XM_006516232.3XP_006516295.1  forkhead box protein N3 isoform X1

      See identical proteins and their annotated locations for XP_006516295.1

      Conserved Domains (1) summary
      pfam00250
      Location:114201
      Forkhead; Forkhead domain
    3. XM_006516233.2XP_006516296.1  forkhead box protein N3 isoform X1

      See identical proteins and their annotated locations for XP_006516296.1

      Conserved Domains (1) summary
      pfam00250
      Location:114201
      Forkhead; Forkhead domain
    4. XM_006516236.3XP_006516299.1  forkhead box protein N3 isoform X1

      See identical proteins and their annotated locations for XP_006516299.1

      Conserved Domains (1) summary
      pfam00250
      Location:114201
      Forkhead; Forkhead domain
    5. XM_006516240.2XP_006516303.1  forkhead box protein N3 isoform X3

      See identical proteins and their annotated locations for XP_006516303.1

      UniProtKB/Swiss-Prot
      Q499D0
      Related
      ENSMUSP00000135082.1, ENSMUST00000177451.7
      Conserved Domains (1) summary
      pfam00250
      Location:114200
      Forkhead; Forkhead domain
    6. XM_017315205.1XP_017170694.1  forkhead box protein N3 isoform X2

      Conserved Domains (1) summary
      pfam00250
      Location:114200
      Forkhead; Forkhead domain
    7. XM_006516234.2XP_006516297.1  forkhead box protein N3 isoform X1

      See identical proteins and their annotated locations for XP_006516297.1

      Conserved Domains (1) summary
      pfam00250
      Location:114201
      Forkhead; Forkhead domain
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