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    Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 [ Mus musculus (house mouse) ]

    Gene ID: 71365, updated on 29-Jun-2021

    Summary

    Official Symbol
    Pdss2provided by MGI
    Official Full Name
    prenyl (solanesyl) diphosphate synthase, subunit 2provided by MGI
    Primary source
    MGI:MGI:1918615
    See related
    Ensembl:ENSMUSG00000038240
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P; kd; mDL; Gm60; Plmp; mDLP1; 5430420P03Rik
    Expression
    Ubiquitous expression in colon adult (RPKM 2.3), adrenal adult (RPKM 2.0) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Pdss2 in Genome Data Viewer
    Location:
    10 B2; 10 22.91 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (43095396..43340878)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (43218248..43464882)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (42941292..43184688)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene sine oculis binding protein Neighboring gene predicted gene, 47815 Neighboring gene RIKEN cDNA 9030612E09 gene Neighboring gene predicted gene, 40631 Neighboring gene ribosomal protein S19, pseudogene 11 Neighboring gene ribosomal protein L41 pseudogene Neighboring gene BEN domain containing 3 Neighboring gene predicted gene, 47889

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    kidney disease
    GeneReviews: Not available

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in cerebellum development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in isoprenoid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in isoprenoid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in isoprenoid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of body fluid levels IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in ubiquinone biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in ubiquinone biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in ubiquinone biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    part_of transferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of transferase complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of transferase complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    all trans-polyprenyl-diphosphate synthase PDSS2; decaprenyl-diphosphate synthase subunit 2
    Names
    all-trans-decaprenyl-diphosphate synthase subunit 2
    decaprenyl pyrophosphate synthase subunit 2
    decaprenyl pyrophosphate synthetase subunit 2
    prenyltransferase-like mitochondrial protein
    solanesyl-diphosphate synthase subunit 2
    NP_001161761.1
    NP_082048.2
    XP_006512915.1
    XP_006512916.1
    XP_006512917.1
    XP_036011908.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168289.1NP_001161761.1  all trans-polyprenyl-diphosphate synthase PDSS2 isoform 2

      See identical proteins and their annotated locations for NP_001161761.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and includes an alternate exon in the 3' coding region, which results in a frameshift, compared to variant 1. The resulting protein (isoform 2) has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK140091, BY733519
      Consensus CDS
      CCDS48552.1
      UniProtKB/Swiss-Prot
      Q33DR3
      Related
      ENSMUSP00000124864.2, ENSMUST00000159139.8
      Conserved Domains (1) summary
      cl00210
      Location:65348
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    2. NM_027772.2NP_082048.2  all trans-polyprenyl-diphosphate synthase PDSS2 isoform 1

      See identical proteins and their annotated locations for NP_082048.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC152922, BC147693, BY733519
      Consensus CDS
      CCDS35891.1
      UniProtKB/Swiss-Prot
      Q33DR3
      Related
      ENSMUSP00000093393.5, ENSMUST00000095725.11
      Conserved Domains (1) summary
      cl00210
      Location:69401
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      43095396..43340878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006512852.5XP_006512915.1  decaprenyl-diphosphate synthase subunit 2 isoform X1

      See identical proteins and their annotated locations for XP_006512915.1

      Conserved Domains (1) summary
      cl00210
      Location:69390
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    2. XM_006512854.5XP_006512917.1  decaprenyl-diphosphate synthase subunit 2 isoform X3

      Conserved Domains (1) summary
      cl00210
      Location:69232
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    3. XM_036156015.1XP_036011908.1  decaprenyl-diphosphate synthase subunit 2 isoform X4

      Conserved Domains (1) summary
      cl00210
      Location:69241
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
    4. XM_006512853.5XP_006512916.1  decaprenyl-diphosphate synthase subunit 2 isoform X2

      Related
      ENSMUSP00000124046.2, ENSMUST00000160823.8
      Conserved Domains (1) summary
      cl00210
      Location:69320
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    RNA

    1. XR_871439.4 RNA Sequence

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