Format

Send to:

Choose Destination
    • Showing Current items.

    4931406C07Rik RIKEN cDNA 4931406C07 gene [ Mus musculus (house mouse) ]

    Gene ID: 70984, updated on 23-Jun-2021

    Summary

    Official Symbol
    4931406C07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4931406C07 geneprovided by MGI
    Primary source
    MGI:MGI:1918234
    See related
    Ensembl:ENSMUSG00000031938
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in kidney adult (RPKM 50.7), subcutaneous fat pad adult (RPKM 17.4) and 23 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 4931406C07Rik in Genome Data Viewer
    Location:
    9; 9 A2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (15194633..15217836, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (15283337..15306448, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (15087783..15106000, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51702 Neighboring gene V-set and transmembrane domain containing 5 Neighboring gene mediator complex subunit 17 Neighboring gene TATA-box binding protein associated factor, RNA polymerase I, D Neighboring gene microRNA 7650 Neighboring gene predicted gene, 24455

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity, acting on ester bonds IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables hydrolase activity, acting on ester bonds ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ester hydrolase C11orf54 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199484.1NP_001186413.1  ester hydrolase C11orf54 homolog isoform 1

      See identical proteins and their annotated locations for NP_001186413.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC154296, AK133192, CK384052
      Consensus CDS
      CCDS22835.1
      UniProtKB/Swiss-Prot
      Q91V76
      Related
      ENSMUSP00000136717.2, ENSMUST00000180339.8
      Conserved Domains (1) summary
      cd17298
      Location:14304
      DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012
    2. NM_001199485.1NP_001186414.1  ester hydrolase C11orf54 homolog isoform 1

      See identical proteins and their annotated locations for NP_001186414.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has a different 5' UTR segment, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AK016432, AK147073, BY118027, CK384052
      Consensus CDS
      CCDS22835.1
      UniProtKB/Swiss-Prot
      Q91V76
      Related
      ENSMUSP00000136335.2, ENSMUST00000178977.9
      Conserved Domains (1) summary
      cd17298
      Location:14304
      DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012
    3. NM_001359258.1NP_001346187.1  ester hydrolase C11orf54 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and lacks an in-frame exon in the coding region, compared to variant 1. This variant encodes a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      AC154296
      Consensus CDS
      CCDS90500.1
      Related
      ENSMUSP00000149878.2, ENSMUST00000216955.2
      Conserved Domains (1) summary
      cd17298
      Location:8271
      DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012
    4. NM_133732.3NP_598493.1  ester hydrolase C11orf54 homolog isoform 1

      See identical proteins and their annotated locations for NP_598493.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has a different 5' UTR segment, compared to variant 1. Variants 1, 2, and 3 encode the same protein.
      Source sequence(s)
      AC154296, AK133192, CK384052, CT010296
      Consensus CDS
      CCDS22835.1
      UniProtKB/Swiss-Prot
      Q91V76
      Related
      ENSMUSP00000034414.9, ENSMUST00000034414.10
      Conserved Domains (1) summary
      cd17298
      Location:14304
      DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      15194633..15217836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155283.1XP_036011176.1  ester hydrolase C11orf54 homolog isoform X2

      Conserved Domains (1) summary
      cd17298
      Location:8271
      DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012
    2. XM_030244585.2XP_030100445.1  ester hydrolase C11orf54 homolog isoform X3

      Conserved Domains (1) summary
      pfam08925
      Location:1192
      DUF1907; Domain of Unknown Function (DUF1907)
    3. XM_006510596.3XP_006510659.1  ester hydrolase C11orf54 homolog isoform X1

      See identical proteins and their annotated locations for XP_006510659.1

      UniProtKB/Swiss-Prot
      Q91V76
      Conserved Domains (1) summary
      cd17298
      Location:14304
      DUF1907; proteins similar to putative ester hydrolase C11orf54/PTD012
    Support Center