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    Nup205 nucleoporin 205 [ Mus musculus (house mouse) ]

    Gene ID: 70699, updated on 23-Jun-2021

    Summary

    Official Symbol
    Nup205provided by MGI
    Official Full Name
    nucleoporin 205provided by MGI
    Primary source
    MGI:MGI:2141625
    See related
    Ensembl:ENSMUSG00000038759
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV248391; mKIAA0225; 3830404O05Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 28.2), CNS E11.5 (RPKM 14.0) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Nup205 in Genome Data Viewer
    Location:
    6; 6 B1
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (35154551..35224534)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (35177616..35247599)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (35127616..35197599)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 4 Neighboring gene CCR4-NOT transcription complex, subunit 4 Neighboring gene predicted gene, 33046 Neighboring gene RIKEN cDNA 1810058I24 gene Neighboring gene predicted gene, 23435 Neighboring gene solute carrier family 13 (sodium/sulfate symporters), member 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in nuclear pore complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in nuclear pore organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear periphery ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore inner ring IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    nuclear pore complex protein Nup205

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027513.1NP_081789.1  nuclear pore complex protein Nup205

      See identical proteins and their annotated locations for NP_081789.1

      Status: VALIDATED

      Source sequence(s)
      BC058729, BC060139, BY713599
      Consensus CDS
      CCDS57418.1
      UniProtKB/TrEMBL
      B9EJ54, Q6P9L5, Q6PDG0
      Related
      ENSMUSP00000039656.10, ENSMUST00000043815.16
      Conserved Domains (1) summary
      pfam11894
      Location:141684
      Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      35154551..35224534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506590.4XP_006506653.1  nuclear pore complex protein Nup205 isoform X1

      Conserved Domains (1) summary
      pfam11894
      Location:551725
      Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205
    2. XM_017321734.3XP_017177223.1  nuclear pore complex protein Nup205 isoform X2

      Conserved Domains (1) summary
      pfam11894
      Location:21644
      Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205
    3. XM_006506593.4XP_006506656.1  nuclear pore complex protein Nup205 isoform X4

      Related
      ENSMUST00000201609.4
      Conserved Domains (1) summary
      cl29134
      Location:1879
      Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205
    4. XM_017321735.3XP_017177224.1  nuclear pore complex protein Nup205 isoform X3

      Conserved Domains (1) summary
      cl29134
      Location:16945
      Nup192; Nuclear pore complex scaffold, nucleoporins 186/192/205

    RNA

    1. XR_001785168.3 RNA Sequence

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