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    Ecd ecdysoneless cell cycle regulator [ Mus musculus (house mouse) ]

    Gene ID: 70601, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ecdprovided by MGI
    Official Full Name
    ecdysoneless cell cycle regulatorprovided by MGI
    Primary source
    MGI:MGI:1917851
    See related
    Ensembl:ENSMUSG00000021810
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hsgt1; 5730461K03Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 13.3), liver E14 (RPKM 10.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ecd in Genome Data Viewer
    Location:
    14; 14 A3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (20369927..20398189, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (20319859..20348121, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (21139081..21167343, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene potassium channel, subfamily K, member 16 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 13 Neighboring gene family with sequence similarity 149, member B Neighboring gene predicted gene, 30054 Neighboring gene DnaJ heat shock protein family (Hsp40) member C9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables histone acetyltransferase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein ecdysoneless homolog
    Names
    ecdysoneless homolog
    protein SGT1 homolog
    suppressor of S. cerevisiae gcr2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027475.3NP_081751.1  protein ecdysoneless homolog

      See identical proteins and their annotated locations for NP_081751.1

      Status: VALIDATED

      Source sequence(s)
      AC159106, AK028664, AW543965, BY272088
      Consensus CDS
      CCDS26842.1
      UniProtKB/Swiss-Prot
      Q9CS74
      Related
      ENSMUSP00000022344.3, ENSMUST00000022344.4
      Conserved Domains (1) summary
      pfam07093
      Location:14597
      SGT1; SGT1 protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      20369927..20398189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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