Format

Send to:

Choose Destination
    • Showing Current items.

    Zc3h11a zinc finger CCCH type containing 11A [ Mus musculus (house mouse) ]

    Gene ID: 70579, updated on 9-Sep-2018

    Summary

    Official Symbol
    Zc3h11aprovided by MGI
    Official Full Name
    zinc finger CCCH type containing 11Aprovided by MGI
    Primary source
    MGI:MGI:1917829
    See related
    Ensembl:ENSMUSG00000102976 Ensembl:ENSMUSG00000116275 Vega:OTTMUSG00000049664
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zc3hh11a; Zc3hdc11a; mKIAA0663; 1110003F06Rik; 5730454B08Rik; G630041M05Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 42.5), bladder adult (RPKM 39.1) and 25 other tissues See more
    Orthologs

    Genomic context

    See Zc3h11a in Genome Data Viewer
    Location:
    1; 1 E4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (133619868..133661399, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (135516448..135557957, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7A pseudogene Neighboring gene small nuclear ribonucleoprotein E Neighboring gene zinc finger, BED type containing 6 Neighboring gene lymphocyte transmembrane adaptor 1 Neighboring gene ATPase, Ca++ transporting, plasma membrane 4 Neighboring gene microRNA 6903

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0663

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    poly(A)+ mRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    poly(A)+ mRNA export from nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    colocalizes_with transcription export complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with transcription export complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    zinc finger CCCH domain-containing protein 11A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001276767.1NP_001263696.1  zinc finger CCCH domain-containing protein 11A

      See identical proteins and their annotated locations for NP_001263696.1

      Status: VALIDATED

      Source sequence(s)
      AC124338
      Consensus CDS
      CCDS15297.1
      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Related
      ENSMUSP00000141255.1, OTTMUSP00000068400, ENSMUST00000191896.5, OTTMUST00000126518
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    2. NM_001357228.1NP_001344157.1  zinc finger CCCH domain-containing protein 11A

      Status: VALIDATED

      Source sequence(s)
      AC124338
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    3. NM_144530.6NP_653113.4  zinc finger CCCH domain-containing protein 11A

      See identical proteins and their annotated locations for NP_653113.4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC124338
      Consensus CDS
      CCDS15297.1
      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Related
      ENSMUSP00000027736.6, ENSMUST00000027736.12
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      133619868..133661399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011248075.1XP_011246377.1  zinc finger CCCH domain-containing protein 11A isoform X1

      See identical proteins and their annotated locations for XP_011246377.1

      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    2. XM_011248076.1XP_011246378.1  zinc finger CCCH domain-containing protein 11A isoform X1

      See identical proteins and their annotated locations for XP_011246378.1

      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    3. XM_011248074.2XP_011246376.1  zinc finger CCCH domain-containing protein 11A isoform X1

      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    4. XM_011248073.2XP_011246375.1  zinc finger CCCH domain-containing protein 11A isoform X1

      See identical proteins and their annotated locations for XP_011246375.1

      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    Support Center