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    Zc3h11a zinc finger CCCH type containing 11A [ Mus musculus (house mouse) ]

    Gene ID: 70579, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zc3h11aprovided by MGI
    Official Full Name
    zinc finger CCCH type containing 11Aprovided by MGI
    Primary source
    MGI:MGI:1917829
    See related
    Ensembl:ENSMUSG00000102976 Ensembl:ENSMUSG00000116275
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zc3hh11a; Zc3hdc11a; mKIAA0663; 1110003F06Rik; 5730454B08Rik; G630041M05Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 42.5), bladder adult (RPKM 39.1) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Zc3h11a in Genome Data Viewer
    Location:
    1; 1 E4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (133547600..133589137, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (133619862..133661399, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (135516448..135557957, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23939 Neighboring gene small nuclear ribonucleoprotein E Neighboring gene predicted gene, 53475 Neighboring gene zinc finger, BED type containing 6 Neighboring gene lymphocyte transmembrane adaptor 1 Neighboring gene ATPase, Ca++ transporting, plasma membrane 4 Neighboring gene microRNA 6903

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0663

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in poly(A)+ mRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in poly(A)+ mRNA export from nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of transcription export complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    zinc finger CCCH domain-containing protein 11A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001276767.1NP_001263696.1  zinc finger CCCH domain-containing protein 11A

      See identical proteins and their annotated locations for NP_001263696.1

      Status: VALIDATED

      Source sequence(s)
      AC124338
      Consensus CDS
      CCDS15297.1
      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Related
      ENSMUSP00000141255.2, ENSMUST00000191896.6
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    2. NM_001357228.1NP_001344157.1  zinc finger CCCH domain-containing protein 11A

      Status: VALIDATED

      Source sequence(s)
      AC124338
      Consensus CDS
      CCDS15297.1
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    3. NM_144530.6NP_653113.4  zinc finger CCCH domain-containing protein 11A

      See identical proteins and their annotated locations for NP_653113.4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC124338
      Consensus CDS
      CCDS15297.1
      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Related
      ENSMUSP00000027736.7, ENSMUST00000027736.13
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      133547600..133589137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153616.1XP_036009509.1  zinc finger CCCH domain-containing protein 11A isoform X1

      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    2. XM_030242922.1XP_030098782.1  zinc finger CCCH domain-containing protein 11A isoform X1

      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    3. XM_030242924.2XP_030098784.1  zinc finger CCCH domain-containing protein 11A isoform X1

      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
    4. XM_011248073.3XP_011246375.1  zinc finger CCCH domain-containing protein 11A isoform X1

      See identical proteins and their annotated locations for XP_011246375.1

      UniProtKB/Swiss-Prot
      Q6NZF1
      UniProtKB/TrEMBL
      Q3UL31
      Conserved Domains (1) summary
      pfam15663
      Location:1110
      zf-CCCH_3; Zinc-finger containing family
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