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    Btf3l4 basic transcription factor 3-like 4 [ Mus musculus (house mouse) ]

    Gene ID: 70533, updated on 31-Jan-2019

    Summary

    Official Symbol
    Btf3l4provided by MGI
    Official Full Name
    basic transcription factor 3-like 4provided by MGI
    Primary source
    MGI:MGI:1915312
    See related
    Ensembl:ENSMUSG00000028568
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI316863; AU022207; AW552446; 4632412E09Rik; 5730434I03Rik
    Expression
    Broad expression in CNS E14 (RPKM 19.6), whole brain E14.5 (RPKM 19.2) and 23 other tissues See more
    Orthologs

    Genomic context

    See Btf3l4 in Genome Data Viewer
    Location:
    4; 4 C7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (108814295..108834297, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (108486900..108506189, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene coiled-coil and C2 domain containing 1B Neighboring gene zinc finger, FYVE domain containing 9 Neighboring gene ribosomal protein L9 pseudogene Neighboring gene thioredoxin domain containing 12 (endoplasmic reticulum) Neighboring gene KTI12 homolog, chromatin associated Neighboring gene RAB3B, member RAS oncogene family Neighboring gene RIKEN cDNA 8030443G20 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    transcription factor BTF3 homolog 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356361.1NP_001343290.1  transcription factor BTF3 homolog 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK004239, AK017614, AK076283, AL607070, BQ554134
      Conserved Domains (1) summary
      pfam01849
      Location:4490
      NAC; NAC domain
    2. NM_027453.3NP_081729.1  transcription factor BTF3 homolog 4

      See identical proteins and their annotated locations for NP_081729.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK004239, AK076283, AL607070, BQ554134, CX122880
      Consensus CDS
      CCDS18456.1
      UniProtKB/Swiss-Prot
      Q9CQH7
      UniProtKB/TrEMBL
      A2A7Z4
      Related
      ENSMUSP00000099803.4, ENSMUST00000102742.10
      Conserved Domains (1) summary
      pfam01849
      Location:4490
      NAC; NAC domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      108814295..108834297 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503391.1XP_006503454.1  transcription factor BTF3 homolog 4 isoform X3

      UniProtKB/Swiss-Prot
      Q9CQH7
      UniProtKB/TrEMBL
      A2A7Z4
      Conserved Domains (1) summary
      pfam01849
      Location:4490
      NAC; NAC domain
    2. XM_011240610.1XP_011238912.1  transcription factor BTF3 homolog 4 isoform X2

      Conserved Domains (1) summary
      pfam01849
      Location:68120
      NAC; NAC domain
    3. XM_006503385.2XP_006503448.1  transcription factor BTF3 homolog 4 isoform X1

      Conserved Domains (1) summary
      pfam01849
      Location:111163
      NAC; NAC domain
    4. XM_011240611.2XP_011238913.1  transcription factor BTF3 homolog 4 isoform X3

      See identical proteins and their annotated locations for XP_011238913.1

      UniProtKB/Swiss-Prot
      Q9CQH7
      UniProtKB/TrEMBL
      A2A7Z4
      Related
      ENSMUSP00000099801.1, ENSMUST00000102740.7
      Conserved Domains (1) summary
      pfam01849
      Location:4490
      NAC; NAC domain
    5. XM_006503390.1XP_006503453.1  transcription factor BTF3 homolog 4 isoform X3

      See identical proteins and their annotated locations for XP_006503453.1

      UniProtKB/Swiss-Prot
      Q9CQH7
      UniProtKB/TrEMBL
      A2A7Z4
      Related
      ENSMUSP00000099802.1, ENSMUST00000102741.7
      Conserved Domains (1) summary
      pfam01849
      Location:4490
      NAC; NAC domain
    6. XM_011240612.1XP_011238914.1  transcription factor BTF3 homolog 4 isoform X3

      See identical proteins and their annotated locations for XP_011238914.1

      UniProtKB/Swiss-Prot
      Q9CQH7
      UniProtKB/TrEMBL
      A2A7Z4
      Related
      ENSMUSP00000099800.1, ENSMUST00000102739.1
      Conserved Domains (1) summary
      pfam01849
      Location:4490
      NAC; NAC domain
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