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    Lman1 lectin, mannose-binding, 1 [ Mus musculus (house mouse) ]

    Gene ID: 70361, updated on 21-Aug-2021

    Summary

    Official Symbol
    Lman1provided by MGI
    Official Full Name
    lectin, mannose-binding, 1provided by MGI
    Primary source
    MGI:MGI:1917611
    See related
    Ensembl:ENSMUSG00000041891
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P5; MR6; P58; gp5; MR60; gp58; ERGIC; F5F8D; MCFD1; ERGIC53; AI326273; AU043785; C730041J05; 2610020P13Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 37.0), limb E14.5 (RPKM 32.3) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Lman1 in Genome Data Viewer
    Location:
    18; 18 E1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (66113810..66135706, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (65980739..66002635, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (66140393..66162289, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene retina and anterior neural fold homeobox Neighboring gene complexin 4 Neighboring gene collagen and calcium binding EGF domains 1 Neighboring gene microRNA 694 Neighboring gene predicted gene, 20294

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mannose binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein ERGIC-53
    Names
    ER-Golgi intermediate compartment 53 kDa protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001172062.1NP_001165533.1  protein ERGIC-53 precursor

      See identical proteins and their annotated locations for NP_001165533.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC152076, AK011495, BY766745
      Consensus CDS
      CCDS29313.1
      UniProtKB/Swiss-Prot
      Q9D0F3
      Related
      ENSMUSP00000158495.2, ENSMUST00000236866.2
      Conserved Domains (1) summary
      cd06902
      Location:52276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
    2. NM_027400.3NP_081676.1  protein ERGIC-53 precursor

      See identical proteins and their annotated locations for NP_081676.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK011495, BF662012, BY766745, CN536547, DV043207, DV659063
      Consensus CDS
      CCDS29313.1
      UniProtKB/Swiss-Prot
      Q9D0F3
      Related
      ENSMUSP00000040140.8, ENSMUST00000048260.15
      Conserved Domains (1) summary
      cd06902
      Location:52276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      66113810..66135706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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