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    Tbc1d13 TBC1 domain family, member 13 [ Mus musculus (house mouse) ]

    Gene ID: 70296, updated on 23-May-2018

    Summary

    Official Symbol
    Tbc1d13provided by MGI
    Official Full Name
    TBC1 domain family, member 13provided by MGI
    Primary source
    MGI:MGI:2385326
    See related
    Ensembl:ENSMUSG00000039678 Vega:OTTMUSG00000016741
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC025586; 2600014A06Rik
    Expression
    Ubiquitous expression in kidney adult (RPKM 43.0), duodenum adult (RPKM 28.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Tbc1d13 in Genome Data Viewer
    Location:
    2; 2 B
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (30133750..30152013)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (29989391..30007533)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene protein kinase N3 Neighboring gene zinc finger, DHHC domain containing 12 Neighboring gene zyg-11 related, cell cycle regulator Neighboring gene solute carrier family 39 (zinc transporter), member 1, pseudogene Neighboring gene predicted gene, 31080

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC38260

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    GTPase activator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Rab GTPase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Rab GTPase binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    activation of GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intracellular protein transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    TBC1 domain family member 13

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146252.3NP_666364.1  TBC1 domain family member 13

      See identical proteins and their annotated locations for NP_666364.1

      Status: VALIDATED

      Source sequence(s)
      AK158066, AL845258, BY206703, BY589058
      Consensus CDS
      CCDS15871.1
      UniProtKB/Swiss-Prot
      Q8R3D1
      UniProtKB/TrEMBL
      Q3TZ63
      Related
      ENSMUSP00000048426.5, OTTMUSP00000018144, ENSMUST00000044556.11, OTTMUST00000040592
      Conserved Domains (1) summary
      smart00164
      Location:32367
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      30133750..30152013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006498320.2XP_006498383.1  TBC1 domain family member 13 isoform X1

      See identical proteins and their annotated locations for XP_006498383.1

      Conserved Domains (1) summary
      smart00164
      Location:28291
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    2. XM_017319254.1XP_017174743.1  TBC1 domain family member 13 isoform X1

      Conserved Domains (1) summary
      smart00164
      Location:28291
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    3. XM_006498321.2XP_006498384.1  TBC1 domain family member 13 isoform X1

      See identical proteins and their annotated locations for XP_006498384.1

      Conserved Domains (1) summary
      smart00164
      Location:28291
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    4. XM_006498322.2XP_006498385.1  TBC1 domain family member 13 isoform X1

      See identical proteins and their annotated locations for XP_006498385.1

      Conserved Domains (1) summary
      smart00164
      Location:28291
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    5. XM_006498324.2XP_006498387.1  TBC1 domain family member 13 isoform X3

      Conserved Domains (1) summary
      smart00164
      Location:28186
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    6. XM_006498323.3XP_006498386.1  TBC1 domain family member 13 isoform X2

      Conserved Domains (1) summary
      smart00164
      Location:40198
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
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