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    Abhd17c abhydrolase domain containing 17C [ Mus musculus (house mouse) ]

    Gene ID: 70178, updated on 9-Sep-2018

    Summary

    Official Symbol
    Abhd17cprovided by MGI
    Official Full Name
    abhydrolase domain containing 17Cprovided by MGI
    Primary source
    MGI:MGI:1917428
    See related
    Ensembl:ENSMUSG00000038459 Vega:OTTMUSG00000028921
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam108c; AL023007; Fam108c1; 2210412D01Rik
    Expression
    Ubiquitous expression in small intestine adult (RPKM 86.1), colon adult (RPKM 84.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Abhd17c in Genome Data Viewer
    Location:
    7; 7 D3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (84109356..84151893, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (91257866..91300403, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene mesoderm development LRP chaperone Neighboring gene cell migration inducing protein, hyaluronan binding Neighboring gene predicted gene, 30440 Neighboring gene predicted gene, 26708 Neighboring gene predicted gene, 39044 Neighboring gene aryl hydrocarbon receptor nuclear translocator 2 Neighboring gene predicted gene, 30873

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    palmitoyl-(protein) hydrolase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    palmitoyl-(protein) hydrolase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    negative regulation of protein localization to microtubule IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of protein localization to endosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein depalmitoylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein palmitoylation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of postsynapse organization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    glutamatergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
     
    synapse IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    alpha/beta hydrolase domain-containing protein 17C
    Names
    abhydrolase domain-containing protein 17C
    abhydrolase domain-containing protein FAM108C1
    family with sequence similarity 108, member C
    protein ABHD17C
    NP_598483.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133722.2NP_598483.2  alpha/beta hydrolase domain-containing protein 17C

      See identical proteins and their annotated locations for NP_598483.2

      Status: VALIDATED

      Source sequence(s)
      AC101659, AK008906, BM943880, BQ033953
      Consensus CDS
      CCDS21417.2
      UniProtKB/Swiss-Prot
      Q8VCV1
      Related
      ENSMUSP00000112988.1, OTTMUSP00000036777, ENSMUST00000117085.1, OTTMUST00000071676
      Conserved Domains (1) summary
      COG1073
      Location:125317
      FrsA; Fermentation-respiration switch protein FrsA, has esterase activity, DUF1100 family [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      84109356..84151893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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