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    Polr2i polymerase (RNA) II (DNA directed) polypeptide I [ Mus musculus (house mouse) ]

    Gene ID: 69920, updated on 9-Sep-2018

    Summary

    Official Symbol
    Polr2iprovided by MGI
    Official Full Name
    polymerase (RNA) II (DNA directed) polypeptide Iprovided by MGI
    Primary source
    MGI:MGI:1917170
    See related
    Ensembl:ENSMUSG00000019738 Vega:OTTMUSG00000023328
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810002B19Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 84.8), whole brain E14.5 (RPKM 58.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Polr2i in Genome Data Viewer
    Location:
    7; 7 B1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (30232074..30233387)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (31017093..31018406)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene calpain, small subunit 1 Neighboring gene tubulin folding cofactor B Neighboring gene ovo like zinc finger 3 Neighboring gene WD repeat domain 62 Neighboring gene ribosomal protein S12, pseudogene 5 Neighboring gene uncharacterized LOC108167416

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC73656

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to DNA-directed 5'-3' RNA polymerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    mRNA cleavage IEA
    Inferred from Electronic Annotation
    more info
     
    maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    transcription initiation from RNA polymerase II promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription-coupled nucleotide-excision repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    RNA polymerase II, core complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    DNA-directed RNA polymerase II subunit RPB9
    Names
    DNA-directed RNA polymerase II subunit I
    RNA polymerase II 14.5 kDa subunit
    RNA polymerase II subunit B9
    RPB14.5
    NP_081535.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027259.1NP_081535.1  DNA-directed RNA polymerase II subunit RPB9

      See identical proteins and their annotated locations for NP_081535.1

      Status: PROVISIONAL

      Source sequence(s)
      BC062812
      Consensus CDS
      CCDS21084.1
      UniProtKB/Swiss-Prot
      P60898
      Related
      ENSMUSP00000019882.9, OTTMUSP00000027176, ENSMUST00000019882.15, OTTMUST00000056523
      Conserved Domains (2) summary
      smart00661
      Location:1568
      RPOL9; RNA polymerase subunit 9
      cd10508
      Location:74124
      Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      30232074..30233387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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