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    Med30 mediator complex subunit 30 [ Mus musculus (house mouse) ]

    Gene ID: 69790, updated on 23-Jun-2021

    Summary

    Official Symbol
    Med30provided by MGI
    Official Full Name
    mediator complex subunit 30provided by MGI
    Primary source
    MGI:MGI:1917040
    See related
    Ensembl:ENSMUSG00000038622
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Thr; Tra; TRAP25; Thrap6; 1810038N03Rik; 2510044J04Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 120.3), thymus adult (RPKM 50.8) and 27 other tissues See more
    Orthologs
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    Genomic context

    See Med30 in Genome Data Viewer
    Location:
    15; 15 C
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (52575841..52593827)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (52712445..52730431)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (52544000..52561986)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23545 Neighboring gene predicted gene, 23267 Neighboring gene predicted gene, 34794 Neighboring gene exostosin glycosyltransferase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Chemically induced (ENU) (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables thyroid hormone receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables transcription coregulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to ubiquitin protein ligase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of mediator complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 30
    Names
    TRAP/Mediator complex component TRAP25
    thyroid hormone receptor associated protein 6
    thyroid hormone receptor-associated protein complex 25 kDa component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027212.2NP_081488.1  mediator of RNA polymerase II transcription subunit 30

      See identical proteins and their annotated locations for NP_081488.1

      Status: PROVISIONAL

      Source sequence(s)
      AK011104
      Consensus CDS
      CCDS27465.1
      UniProtKB/Swiss-Prot
      Q9CQI9
      Related
      ENSMUSP00000042204.8, ENSMUST00000037115.9
      Conserved Domains (1) summary
      pfam11315
      Location:29176
      Med30; Mediator complex subunit 30

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      52575841..52593827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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