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    Ccdc115 coiled-coil domain containing 115 [ Mus musculus (house mouse) ]

    Gene ID: 69668, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ccdc115provided by MGI
    Official Full Name
    coiled-coil domain containing 115provided by MGI
    Primary source
    MGI:MGI:1916918
    See related
    Ensembl:ENSMUSG00000042111
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccp1; 2310061I09Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 16.7), placenta adult (RPKM 16.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ccdc115 in Genome Data Viewer
    Location:
    1; 1 B
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (34436670..34439672, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (34493515..34496517, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene microRNA 5103 Neighboring gene nuclear encoded tRNA glutamic acid 1 (anticodon TTC) Neighboring gene IMP4, U3 small nucleolar ribonucleoprotein Neighboring gene predicted gene, 32504 Neighboring gene protein tyrosine phosphatase, non-receptor type 18

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    unfolded protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cellular iron ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    cellular response to increased oxygen levels ISO
    Inferred from Sequence Orthology
    more info
     
    lysosomal lumen acidification ISO
    Inferred from Sequence Orthology
    more info
     
    lysosomal protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    vacuolar proton-transporting V-type ATPase complex assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    COPI-coated vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum-Golgi intermediate compartment ISO
    Inferred from Sequence Orthology
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    extrinsic component of endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lysosome ISO
    Inferred from Sequence Orthology
    more info
     
    vacuolar proton-transporting V-type ATPase complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 115
    Names
    coiled-coil protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027159.2NP_081435.1  coiled-coil domain-containing protein 115

      See identical proteins and their annotated locations for NP_081435.1

      Status: VALIDATED

      Source sequence(s)
      AC106841, AI853654, AK162237
      Consensus CDS
      CCDS14866.1
      UniProtKB/Swiss-Prot
      Q8VE99
      Related
      ENSMUSP00000042918.8, ENSMUST00000042493.9

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      34436670..34439672 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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