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    Cd164l2 CD164 sialomucin-like 2 [ Mus musculus (house mouse) ]

    Gene ID: 69655, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cd164l2provided by MGI
    Official Full Name
    CD164 sialomucin-like 2provided by MGI
    Primary source
    MGI:MGI:1916905
    See related
    Ensembl:ENSMUSG00000028865
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310047N01Rik
    Expression
    Broad expression in mammary gland adult (RPKM 9.3), ovary adult (RPKM 7.9) and 15 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cd164l2 in Genome Data Viewer
    Location:
    4; 4 D2.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (132948120..132951865)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (133220809..133224554)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (132776724..132780469)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene WASP family, member 2 Neighboring gene microRNA 7017 Neighboring gene G-protein coupled receptor 3 Neighboring gene ficolin C pseudogene Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene synaptotagmin-like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Potential readthrough

    Included gene: Gpr3

    Homology

    Clone Names

    • MGC130580

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasmic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CD164 sialomucin-like 2 protein
    Names
    D164 sialomucin-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027152.1NP_081428.1  CD164 sialomucin-like 2 protein precursor

      See identical proteins and their annotated locations for NP_081428.1

      Status: VALIDATED

      Source sequence(s)
      AK009888, AK158529, AV057800, CJ072306
      Consensus CDS
      CCDS38901.1
      UniProtKB/Swiss-Prot
      Q9D6W7
      UniProtKB/TrEMBL
      Q3TYL8
      Related
      ENSMUSP00000101530.2, ENSMUST00000105910.2
      Conserved Domains (1) summary
      pfam05283
      Location:53171
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      132948120..132951865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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